Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq236 241 1e-58
seq182 111 2e-19
>seq236
Length=650478
Score = 241 bits (266), Expect = 1e-58
Identities = 687/1039 (66%), Gaps = 38/1039 (4%)
Strand=Plus/Plus
Query 78872 CATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGG 78931
||||||| || || || || |||| |||||| ||||| || || | |||||||||| ||
Sbjct 518904 CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGG 518963
Query 78932 CCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990
|| | | || |||| || |||| || |||| ||||| ||| | |||||
Sbjct 518964 CCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACT 519022
Query 78991 CGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG------AAAG 79042
|||| ||||||| | || |||||| || || ||| || ||| || |
Sbjct 519023 TGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTCCACAAATG 519080
Query 79043 TCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCTAGAAACCT 79099
| || || ||| | || |||| ||| || || | || || | || ||| ||| |
Sbjct 519081 TTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGCAGAGTATT 519137
Query 79100 CGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155
||| ||||||||||||||||| || ||| |||||||||| |||||| ||||||
Sbjct 519138 CGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCTTTTGGTTG 519193
Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215
||||||| ||| || || |||||||| |||| | || | ||||||||| ||| |
Sbjct 519194 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 519253
Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTACCGACCCTG 79271
| ||||| | || ||| | | |||| || ||| | | |||| || |
Sbjct 519254 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTC 519313
Query 79272 TGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGG 79331
| | || || || | | | || | || ||||| ||||| | || || ||
Sbjct 519314 T----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 519369
Query 79332 GCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAG 79391
|| || | |||||||| || ||| ||| ||| ||| ||||| || |||||||||
Sbjct 519370 ACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 519429
Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451
||||| ||||||| ||| ||| || || ||| || | || || | ||| |||||
Sbjct 519430 ATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTT 519489
Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511
| || || || || || || | | || |||||||| ||||| ||||||| || ||
Sbjct 519490 CTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAA 519549
Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571
| ||| |||||| || || |||| |||||| | || ||||| |||||||||||
Sbjct 519550 TGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCG 519609
Query 79572 GAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC 79631
||||| || |||||||||| || | ||||| || ||| ||| || ||| | ||
Sbjct 519610 TAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGC 519669
Query 79632 CCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACT 79690
|| || | | | | || || || || || || | || ||||| || ||
Sbjct 519670 ACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 519728
Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750
|||||| || || || || || || || || ||||||||| | | ||||||||
Sbjct 519729 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 519788
Query 79751 TCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809
|| | |||| | |||| ||||| ||| ||| || || || | ||||| ||||||
Sbjct 519789 ATGAAAGCTGT-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 519847
Query 79810 AACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATG 79869
| || | | ||| || | ||| ||||| || ||| | || ||||| ||||| ||
Sbjct 519848 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATA 519907
Query 79870 CCGACCGCGACGCGCATGA 79888
|| || || || |||||||
Sbjct 519908 CCAACGGCAACACGCATGA 519926
Score = 172 bits (190), Expect = 6e-38
Identities = 396/591 (67%), Gaps = 4/591 (1%)
Strand=Plus/Minus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175
||||||| || || || || || || || ||||| || | | | | ||||| |||
Sbjct 519926 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 519867
Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235
|||| ||| | | || | |||||| ||||| | || || |||||| ||| |||||
Sbjct 519866 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 519807
Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
|||| | ||| | || || ||||| | | ||||||||| || || ||||| ||
Sbjct 519806 CACAAGCA-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGT 519748
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354
|| || || || |||||| || || ||||| || | || ||||| || ||
Sbjct 519747 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 519688
Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413
|| | | | | ||||| | | |||| || ||| || || ||||| || |
Sbjct 519687 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 519629
Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473
||| ||||| || ||||| || || ||||| ||||| || || |||||| |||| || ||
Sbjct 519628 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 519569
Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533
||| || || | || || |||| || ||||| |||||||| || || | ||
Sbjct 519568 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 519509
Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593
||||| || || || |||||| || | || || | ||| || || || |||
Sbjct 519508 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 519449
Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653
||||||||||||||||| || |||||| || ||||| ||| ||| || ||| ||
Sbjct 519448 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 519389
Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704
|||||||| | ||||| ||||| | | || || || ||||| | |||
Sbjct 519388 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 519338
>seq182
Length=792865
Score = 111 bits (122), Expect = 2e-19
Identities = 115/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || ||
Sbjct 654747 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 654805
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| ||
Sbjct 654806 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 654865
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCAT 60119
||| || ||||| || || || ||||||
Sbjct 654866 GCTCATCTCCCGTGATGAAGGTCTCCAT 654893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548523037864080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |