Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq236 241 1e-58 seq182 111 2e-19 >seq236 Length=650478 Score = 241 bits (266), Expect = 1e-58 Identities = 687/1039 (66%), Gaps = 38/1039 (4%) Strand=Plus/Plus Query 78872 CATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGG 78931 ||||||| || || || || |||| |||||| ||||| || || | |||||||||| || Sbjct 518904 CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGG 518963 Query 78932 CCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990 || | | || |||| || |||| || |||| ||||| ||| | ||||| Sbjct 518964 CCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACT 519022 Query 78991 CGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG------AAAG 79042 |||| ||||||| | || |||||| || || ||| || ||| || | Sbjct 519023 TGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTCCACAAATG 519080 Query 79043 TCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCTAGAAACCT 79099 | || || ||| | || |||| ||| || || | || || | || ||| ||| | Sbjct 519081 TTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGCAGAGTATT 519137 Query 79100 CGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 ||| ||||||||||||||||| || ||| |||||||||| |||||| |||||| Sbjct 519138 CGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCTTTTGGTTG 519193 Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215 ||||||| ||| || || |||||||| |||| | || | ||||||||| ||| | Sbjct 519194 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 519253 Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTACCGACCCTG 79271 | ||||| | || ||| | | |||| || ||| | | |||| || | Sbjct 519254 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTC 519313 Query 79272 TGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGG 79331 | | || || || | | | || | || ||||| ||||| | || || || Sbjct 519314 T----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 519369 Query 79332 GCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAG 79391 || || | |||||||| || ||| ||| ||| ||| ||||| || ||||||||| Sbjct 519370 ACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 519429 Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451 ||||| ||||||| ||| ||| || || ||| || | || || | ||| ||||| Sbjct 519430 ATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTT 519489 Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511 | || || || || || || | | || |||||||| ||||| ||||||| || || Sbjct 519490 CTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAA 519549 Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571 | ||| |||||| || || |||| |||||| | || ||||| ||||||||||| Sbjct 519550 TGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCG 519609 Query 79572 GAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC 79631 ||||| || |||||||||| || | ||||| || ||| ||| || ||| | || Sbjct 519610 TAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGC 519669 Query 79632 CCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACT 79690 || || | | | | || || || || || || | || ||||| || || Sbjct 519670 ACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 519728 Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750 |||||| || || || || || || || || ||||||||| | | |||||||| Sbjct 519729 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 519788 Query 79751 TCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 || | |||| | |||| ||||| ||| ||| || || || | ||||| |||||| Sbjct 519789 ATGAAAGCTGT-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 519847 Query 79810 AACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATG 79869 | || | | ||| || | ||| ||||| || ||| | || ||||| ||||| || Sbjct 519848 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATA 519907 Query 79870 CCGACCGCGACGCGCATGA 79888 || || || || ||||||| Sbjct 519908 CCAACGGCAACACGCATGA 519926 Score = 172 bits (190), Expect = 6e-38 Identities = 396/591 (67%), Gaps = 4/591 (1%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| || || || || || || || ||||| || | | | | ||||| ||| Sbjct 519926 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 519867 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 |||| ||| | | || | |||||| ||||| | || || |||||| ||| ||||| Sbjct 519866 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 519807 Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 |||| | ||| | || || ||||| | | ||||||||| || || ||||| || Sbjct 519806 CACAAGCA-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGT 519748 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 || || || || |||||| || || ||||| || | || ||||| || || Sbjct 519747 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 519688 Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 || | | | | ||||| | | |||| || ||| || || ||||| || | Sbjct 519687 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 519629 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| ||||| || ||||| || || ||||| ||||| || || |||||| |||| || || Sbjct 519628 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 519569 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | || || |||| || ||||| |||||||| || || | || Sbjct 519568 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 519509 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 ||||| || || || |||||| || | || || | ||| || || || ||| Sbjct 519508 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 519449 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 ||||||||||||||||| || |||||| || ||||| ||| ||| || ||| || Sbjct 519448 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 519389 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 |||||||| | ||||| ||||| | | || || || ||||| | ||| Sbjct 519388 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 519338 >seq182 Length=792865 Score = 111 bits (122), Expect = 2e-19 Identities = 115/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || || Sbjct 654747 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 654805 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| || Sbjct 654806 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 654865 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||| || ||||| || || || |||||| Sbjct 654866 GCTCATCTCCCGTGATGAAGGTCTCCAT 654893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523037864080