Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq247 176 5e-39
seq112 176 5e-39
seq89 170 2e-37
seq236 150 2e-31
>seq247
Length=916335
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| |||||||| ||||| || || | |||||||||||
Sbjct 302823 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 302764
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || |||| | || || || || |||||||| || || || ||||||
Sbjct 302763 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 302704
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || ||||||||||||||||| ||||||| || || ||| ||||||| ||
Sbjct 302703 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 302644
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || ||| | ||| | ||||| || |||||
Sbjct 302643 ATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGTCTCCGTGGTGG 302597
Score = 161 bits (178), Expect = 1e-34
Identities = 167/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || ||||||||||| ||||| || | ||| |
Sbjct 303039 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 302980
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || || |||||||||||||| |||||||| || || || ||| | ||
Sbjct 302979 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 302920
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596
|| |||||||| |||||||| |||| ||| ||||| ||| ||||| || ||||||| ||
Sbjct 302919 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGC-GACTACAACATCCAAAAAGA 302861
Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||| ||||| | || | || ||||| |||||
Sbjct 302860 ATCCACCCTTCACTTGGTGCTCCGCCTTCGTGGTGG 302825
Score = 136 bits (150), Expect = 5e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| | |||| ||| | || | |||
Sbjct 303307 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 303248
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||| |||||||||||||| || ||||| ||||| | || || || || ||
Sbjct 303247 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 303188
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
||||| || |||| |||||| | ||| ||||| || | |||||||| || ||||| ||
Sbjct 303187 CAACTTGAAGATGGCCGTACCTTGAGC-GACTACAACATTCAAAAGGAGTCTACTCTCCA 303129
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
||| ||| | |||||||| || ||
Sbjct 303128 TCTCGTCCTCCGTCTTCGTGGCGG 303105
Score = 113 bits (124), Expect = 5e-20
Identities = 189/272 (69%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || || ||||| ||||| | || || || ||
Sbjct 302595 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 302536
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||| | || ||||| ||||||||||| || || || |||||
Sbjct 302535 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 302476
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || |||||||| ||||| | ||||||| | || || | || || ||
Sbjct 302475 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 302416
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645
| || ||||| |||| | || | || | |||||||| || || ||| || | |
Sbjct 302415 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGGTCAA---TAGATT 302359
Query 27646 TTT---TCCTGCACATATAATATATGGCTTTC 27674
|| | |||||||||| ||| ||| |||
Sbjct 302358 CTTATCTTCTGCACATATCTTATGCGGCGTTC 302327
>seq112
Length=1448063
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| |||||||| ||||| || || | |||||||||||
Sbjct 1211366 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 1211425
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || |||| | || || || || |||||||| || || || ||||||
Sbjct 1211426 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 1211485
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || ||||||||||||||||| ||||||| || || ||| ||||||| ||
Sbjct 1211486 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 1211545
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || ||| | ||| | ||||| || |||||
Sbjct 1211546 ATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGTCTCCGTGGTGG 1211592
Score = 161 bits (178), Expect = 1e-34
Identities = 167/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || ||||||||||| ||||| || | ||| |
Sbjct 1211150 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 1211209
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || || |||||||||||||| |||||||| || || || ||| | ||
Sbjct 1211210 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 1211269
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596
|| |||||||| |||||||| |||| ||| ||||| ||| ||||| || ||||||| ||
Sbjct 1211270 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGC-GACTACAACATCCAAAAAGA 1211328
Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||| ||||| | || | || ||||| |||||
Sbjct 1211329 ATCCACCCTTCACTTGGTGCTCCGCCTTCGTGGTGG 1211364
Score = 143 bits (158), Expect = 3e-29
Identities = 141/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| || ||||| || || |||||||| ||||| ||||| ||
Sbjct 15523 CTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTAT 15582
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
|| ||| | ||| | || || |||||||||||||||||||| || ||||| || ||| |
Sbjct 15583 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTT 15642
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || |||||||||||||| | || ||||| ||||||| || | |||||
Sbjct 15643 GATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 15702
Query 27594 GG 27595
||
Sbjct 15703 GG 15704
Score = 136 bits (150), Expect = 5e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| | |||| ||| | || | |||
Sbjct 1210882 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 1210941
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||| |||||||||||||| || ||||| ||||| | || || || || ||
Sbjct 1210942 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 1211001
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
||||| || |||| |||||| | ||| ||||| || | |||||||| || ||||| ||
Sbjct 1211002 CAACTTGAAGATGGCCGTACCTTGAGC-GACTACAACATTCAAAAGGAGTCTACTCTCCA 1211060
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
||| ||| | |||||||| || ||
Sbjct 1211061 TCTCGTCCTCCGTCTTCGTGGCGG 1211084
Score = 113 bits (124), Expect = 5e-20
Identities = 189/272 (69%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || || ||||| ||||| | || || || ||
Sbjct 1211594 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 1211653
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||| | || ||||| ||||||||||| || || || |||||
Sbjct 1211654 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 1211713
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || |||||||| ||||| | ||||||| | || || | || || ||
Sbjct 1211714 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 1211773
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645
| || ||||| |||| | || | || | |||||||| || || ||| || | |
Sbjct 1211774 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGGTCAA---TAGATT 1211830
Query 27646 TTT---TCCTGCACATATAATATATGGCTTTC 27674
|| | |||||||||| ||| ||| |||
Sbjct 1211831 CTTATCTTCTGCACATATCTTATGCGGCGTTC 1211862
>seq89
Length=741344
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||| || || || || || || || || || |||||||| || |
Sbjct 321744 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 321685
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||| | || || ||||||||||||||||| || || || |||
Sbjct 321684 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 321625
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || || || || ||||||||||| |||| || ||||| | ||||| ||
Sbjct 321624 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 321565
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||||||||||||||| | ||| | ||||| || |||||
Sbjct 321564 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGG 321518
>seq236
Length=650478
Score = 150 bits (166), Expect = 2e-31
Identities = 525/811 (65%), Gaps = 19/811 (2%)
Strand=Plus/Plus
Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009
||||| ||||| ||||||||||| || ||| || || ||||| || ||||| |
Sbjct 519137 TCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTC 519196
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| |||||| || |||||||| |||| | || | |||||||| || | || |
Sbjct 519197 TTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCG 519256
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129
|| |||| || ||||| || | || |||| |||||| | | ||||| | ||
Sbjct 519257 AGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTCA 519316
Query 81130 TACTTGGCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCAC 81186
|| | | || |||||| |||| | | || | | |||| | | || ||
Sbjct 519317 TAACTCTCATAGAGAGCTTCA---AACTCGTCGCCATATACATCAGCCAACCCAGGACAT 519373
Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246
|| || |||||||| || ||| || | || || || ||| ||||||||| ||
Sbjct 519374 TCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCC 519433
Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306
|| ||||| | ||| ||| || || ||| ||| | || || | || |||||
Sbjct 519434 GGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTT 519493
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
|| | || || || || | | || || ||||| ||||| ||||| || || | |
Sbjct 519494 CGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCA 519553
Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
|| || | ||||| |||| |||||| | ||||| || || || || | |
Sbjct 519554 CCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGC 519613
Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483
|| || | ||| || | || | |||||| ||||| |||| | || |||| ||
Sbjct 519614 ATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGG 519673
Query 81484 ACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTT--GAAATCTGAGCACACCGG 81540
| || ||| || ||||| || || || | || ||| || ||| ||||||
Sbjct 519674 ATTCTG-TGAATGTTGAGACCAATACCTCCAG--CATTTTTAGAGATCATAGCACATGTC 519730
Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTT 81600
|| | ||| |||||||| || || || ||||| | ||||| |||| | ||| || |
Sbjct 519731 TTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGAT 519790
Query 81601 GACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658
|| | ||| | ||| | | | || || ||| ||||| |||| ||||| |||| |
Sbjct 519791 GAAAGCTGTG--CTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 519848
Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718
| ||| ||||| |||| ||||| || || ||| |||||||||||||||||||
Sbjct 519849 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATAC 519908
Query 81719 CGATAGCTACACGCATAAACATGTACTGGGG 81749
| | || |||||||| | ||| | ||| ||
Sbjct 519909 CAACGGCAACACGCATGATCATTTGCTGTGG 519939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570308567877840
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