Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq247 176 5e-39 seq112 176 5e-39 seq89 170 2e-37 seq236 150 2e-31 >seq247 Length=916335 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||| ||||| || || | ||||||||||| Sbjct 302823 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 302764 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || |||| | || || || || |||||||| || || || |||||| Sbjct 302763 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 302704 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||||||||| ||||||| || || ||| ||||||| || Sbjct 302703 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 302644 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || ||| | ||| | ||||| || ||||| Sbjct 302643 ATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGTCTCCGTGGTGG 302597 Score = 161 bits (178), Expect = 1e-34 Identities = 167/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||| ||||| || | ||| | Sbjct 303039 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 302980 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| |||||||| || || || ||| | || Sbjct 302979 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 302920 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 || |||||||| |||||||| |||| ||| ||||| ||| ||||| || ||||||| || Sbjct 302919 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGC-GACTACAACATCCAAAAAGA 302861 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| ||||| | || | || ||||| ||||| Sbjct 302860 ATCCACCCTTCACTTGGTGCTCCGCCTTCGTGGTGG 302825 Score = 136 bits (150), Expect = 5e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| | |||| ||| | || | ||| Sbjct 303307 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 303248 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||| |||||||||||||| || ||||| ||||| | || || || || || Sbjct 303247 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 303188 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||||| || |||| |||||| | ||| ||||| || | |||||||| || ||||| || Sbjct 303187 CAACTTGAAGATGGCCGTACCTTGAGC-GACTACAACATTCAAAAGGAGTCTACTCTCCA 303129 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||| | |||||||| || || Sbjct 303128 TCTCGTCCTCCGTCTTCGTGGCGG 303105 Score = 113 bits (124), Expect = 5e-20 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| ||||| | || || || || Sbjct 302595 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 302536 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| | || ||||| ||||||||||| || || || ||||| Sbjct 302535 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 302476 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| | ||||||| | || || | || || || Sbjct 302475 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 302416 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 | || ||||| |||| | || | || | |||||||| || || ||| || | | Sbjct 302415 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGGTCAA---TAGATT 302359 Query 27646 TTT---TCCTGCACATATAATATATGGCTTTC 27674 || | |||||||||| ||| ||| ||| Sbjct 302358 CTTATCTTCTGCACATATCTTATGCGGCGTTC 302327 >seq112 Length=1448063 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||| ||||| || || | ||||||||||| Sbjct 1211366 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 1211425 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || |||| | || || || || |||||||| || || || |||||| Sbjct 1211426 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 1211485 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||||||||| ||||||| || || ||| ||||||| || Sbjct 1211486 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 1211545 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || ||| | ||| | ||||| || ||||| Sbjct 1211546 ATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGTCTCCGTGGTGG 1211592 Score = 161 bits (178), Expect = 1e-34 Identities = 167/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||| ||||| || | ||| | Sbjct 1211150 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 1211209 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| |||||||| || || || ||| | || Sbjct 1211210 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 1211269 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 || |||||||| |||||||| |||| ||| ||||| ||| ||||| || ||||||| || Sbjct 1211270 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGC-GACTACAACATCCAAAAAGA 1211328 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| ||||| | || | || ||||| ||||| Sbjct 1211329 ATCCACCCTTCACTTGGTGCTCCGCCTTCGTGGTGG 1211364 Score = 143 bits (158), Expect = 3e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| || ||||| || || |||||||| ||||| ||||| || Sbjct 15523 CTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTAT 15582 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || |||||||||||||||||||| || ||||| || ||| | Sbjct 15583 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTT 15642 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || |||||||||||||| | || ||||| ||||||| || | ||||| Sbjct 15643 GATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 15702 Query 27594 GG 27595 || Sbjct 15703 GG 15704 Score = 136 bits (150), Expect = 5e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| | |||| ||| | || | ||| Sbjct 1210882 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 1210941 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||| |||||||||||||| || ||||| ||||| | || || || || || Sbjct 1210942 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 1211001 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||||| || |||| |||||| | ||| ||||| || | |||||||| || ||||| || Sbjct 1211002 CAACTTGAAGATGGCCGTACCTTGAGC-GACTACAACATTCAAAAGGAGTCTACTCTCCA 1211060 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||| | |||||||| || || Sbjct 1211061 TCTCGTCCTCCGTCTTCGTGGCGG 1211084 Score = 113 bits (124), Expect = 5e-20 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| ||||| | || || || || Sbjct 1211594 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 1211653 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| | || ||||| ||||||||||| || || || ||||| Sbjct 1211654 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 1211713 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| | ||||||| | || || | || || || Sbjct 1211714 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 1211773 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 | || ||||| |||| | || | || | |||||||| || || ||| || | | Sbjct 1211774 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGGTCAA---TAGATT 1211830 Query 27646 TTT---TCCTGCACATATAATATATGGCTTTC 27674 || | |||||||||| ||| ||| ||| Sbjct 1211831 CTTATCTTCTGCACATATCTTATGCGGCGTTC 1211862 >seq89 Length=741344 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || || || || || || |||||||| || | Sbjct 321744 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 321685 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| | || || ||||||||||||||||| || || || ||| Sbjct 321684 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 321625 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || ||||||||||| |||| || ||||| | ||||| || Sbjct 321624 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 321565 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||||||||| | ||| | ||||| || ||||| Sbjct 321564 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGG 321518 >seq236 Length=650478 Score = 150 bits (166), Expect = 2e-31 Identities = 525/811 (65%), Gaps = 19/811 (2%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||||| ||||| ||||||||||| || ||| || || ||||| || ||||| | Sbjct 519137 TCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTC 519196 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| || |||||||| |||| | || | |||||||| || | || | Sbjct 519197 TTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCG 519256 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 || |||| || ||||| || | || |||| |||||| | | ||||| | || Sbjct 519257 AGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTCA 519316 Query 81130 TACTTGGCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCAC 81186 || | | || |||||| |||| | | || | | |||| | | || || Sbjct 519317 TAACTCTCATAGAGAGCTTCA---AACTCGTCGCCATATACATCAGCCAACCCAGGACAT 519373 Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246 || || |||||||| || ||| || | || || || ||| ||||||||| || Sbjct 519374 TCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCC 519433 Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306 || ||||| | ||| ||| || || ||| ||| | || || | || ||||| Sbjct 519434 GGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTT 519493 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | || || || || | | || || ||||| ||||| ||||| || || | | Sbjct 519494 CGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCA 519553 Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 || || | ||||| |||| |||||| | ||||| || || || || | | Sbjct 519554 CCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGC 519613 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483 || || | ||| || | || | |||||| ||||| |||| | || |||| || Sbjct 519614 ATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGG 519673 Query 81484 ACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTT--GAAATCTGAGCACACCGG 81540 | || ||| || ||||| || || || | || ||| || ||| |||||| Sbjct 519674 ATTCTG-TGAATGTTGAGACCAATACCTCCAG--CATTTTTAGAGATCATAGCACATGTC 519730 Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTT 81600 || | ||| |||||||| || || || ||||| | ||||| |||| | ||| || | Sbjct 519731 TTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGAT 519790 Query 81601 GACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658 || | ||| | ||| | | | || || ||| ||||| |||| ||||| |||| | Sbjct 519791 GAAAGCTGTG--CTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 519848 Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718 | ||| ||||| |||| ||||| || || ||| ||||||||||||||||||| Sbjct 519849 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATAC 519908 Query 81719 CGATAGCTACACGCATAAACATGTACTGGGG 81749 | | || |||||||| | ||| | ||| || Sbjct 519909 CAACGGCAACACGCATGATCATTTGCTGTGG 519939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308567877840