Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq247 86.0 4e-12 seq112 86.0 4e-12 >seq247 Length=916335 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||| | ||||| || |||||| | || || ||| | Sbjct 302595 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 302536 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||| || ||||| || ||| | || ||| | Sbjct 302535 GATACCATTGACAAT--GTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACC 302478 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964 | || || || || ||||| ||||| || ||||| || | |||| || | || |||| Sbjct 302477 AACAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATG---GCAGAACTCTTTCTGATT 302421 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || |||||||||||||| ||||| | ||| | |||||||| Sbjct 302420 ACAACATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGG 302369 >seq112 Length=1448063 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||| | ||||| || |||||| | || || ||| | Sbjct 1211594 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 1211653 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||| || ||||| || ||| | || ||| | Sbjct 1211654 GATACCATTGACAAT--GTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACC 1211711 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964 | || || || || ||||| ||||| || ||||| || | |||| || | || |||| Sbjct 1211712 AACAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATG---GCAGAACTCTTTCTGATT 1211768 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || |||||||||||||| ||||| | ||| | |||||||| Sbjct 1211769 ACAACATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGG 1211820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861285372239