Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq247 86.0 4e-12
seq112 86.0 4e-12
>seq247
Length=916335
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/232 (69%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || || ||| | ||||| || |||||| | || || ||| |
Sbjct 302595 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 302536
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| ||||| ||| || ||||| || ||| | || ||| |
Sbjct 302535 GATACCATTGACAAT--GTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACC 302478
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964
| || || || || ||||| ||||| || ||||| || | |||| || | || ||||
Sbjct 302477 AACAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATG---GCAGAACTCTTTCTGATT 302421
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || || |||||||||||||| ||||| | ||| | ||||||||
Sbjct 302420 ACAACATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGG 302369
>seq112
Length=1448063
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/232 (69%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || || ||| | ||||| || |||||| | || || ||| |
Sbjct 1211594 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 1211653
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| ||||| ||| || ||||| || ||| | || ||| |
Sbjct 1211654 GATACCATTGACAAT--GTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACC 1211711
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964
| || || || || ||||| ||||| || ||||| || | |||| || | || ||||
Sbjct 1211712 AACAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATG---GCAGAACTCTTTCTGATT 1211768
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || || |||||||||||||| ||||| | ||| | ||||||||
Sbjct 1211769 ACAACATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGG 1211820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355861285372239
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |