Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq89 197 3e-45 seq247 163 7e-35 seq112 163 7e-35 seq236 107 4e-18 seq67 100 7e-16 >seq89 Length=741344 Score = 197 bits (218), Expect = 3e-45 Identities = 171/212 (81%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||||||||| || ||||||||||| || || | |||||| | ||||||| Sbjct 321533 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 321592 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || ||||| || ||||| || | ||| ||||||||| Sbjct 321593 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 321652 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| |||||| |||||||||||| ||||| || Sbjct 321653 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 321712 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || || || | |||||| Sbjct 321713 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744 >seq247 Length=916335 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| ||||| |||||||||||||| || || ||||| Sbjct 302830 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 302889 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || |||||||| | |||||||| || ||||||| || Sbjct 302890 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACC 302949 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||||||||| || || ||||| || Sbjct 302950 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAG 303009 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| ||||| || ||||||||||| || Sbjct 303010 AGTGATGGTCTTGCCAGTGAGAGTCTTGAC 303039 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || ||||||||||| |||||||| || || | || || | ||||| Sbjct 302612 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 302671 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || |||||||| ||||| ||||| || || | || ||||| || Sbjct 302672 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 302731 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| ||||||||| |||||||| || || |||||||| | ||||| ||| Sbjct 302732 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 302791 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | ||||| Sbjct 302792 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823 Score = 143 bits (158), Expect = 6e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| || || ||||| ||||| ||||| ||||| || || | ||||| Sbjct 303110 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGG- 303168 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| || || |||||||||||||| | ||| |||||||| || |||| || Sbjct 303169 TACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTC 303228 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| ||||| ||||| || ||||| |||||||| || | || ||||||| Sbjct 303229 CCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGA 303288 Query 211072 GAGTGATCGTCTTTCCCGTGA 211092 | ||||| ||||| || |||| Sbjct 303289 GGGTGATGGTCTTGCCGGTGA 303309 >seq112 Length=1448063 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| ||||| |||||||||||||| || || ||||| Sbjct 1211359 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 1211300 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || |||||||| | |||||||| || ||||||| || Sbjct 1211299 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACC 1211240 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||||||||| || || ||||| || Sbjct 1211239 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAG 1211180 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| ||||| || ||||||||||| || Sbjct 1211179 AGTGATGGTCTTGCCAGTGAGAGTCTTGAC 1211150 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || ||||||||||| |||||||| || || | || || | ||||| Sbjct 1211577 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 1211518 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || |||||||| ||||| ||||| || || | || ||||| || Sbjct 1211517 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 1211458 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| ||||||||| |||||||| || || |||||||| | ||||| ||| Sbjct 1211457 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 1211398 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | ||||| Sbjct 1211397 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366 Score = 143 bits (158), Expect = 6e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| || || ||||| ||||| ||||| ||||| || || | ||||| Sbjct 1211079 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGG- 1211021 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| || || |||||||||||||| | ||| |||||||| || |||| || Sbjct 1211020 TACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTC 1210961 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| ||||| ||||| || ||||| |||||||| || | || ||||||| Sbjct 1210960 CCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGA 1210901 Query 211072 GAGTGATCGTCTTTCCCGTGA 211092 | ||||| ||||| || |||| Sbjct 1210900 GGGTGATGGTCTTGCCGGTGA 1210880 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || || | |||||| | ||| || || || ||||| || |||||||| Sbjct 15702 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15643 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||||||||| || |||| ||| ||||||||||||||||| || || || || Sbjct 15642 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 15583 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || |||||| || ||||| || ||||| ||||||||||| || ||||| || || Sbjct 15582 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 15524 >seq236 Length=650478 Score = 107 bits (118), Expect = 4e-18 Identities = 191/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||||||||||||||| || ||||| ||||| ||||| || |||| Sbjct 519181 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 519240 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||||| ||||||| |||||||| | |||||||| |||||| || ||||| | Sbjct 519241 CTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACC 519300 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 | | ||||| ||||| || | | ||||| | || || || ||||| |||||| | Sbjct 519301 TCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGC 519360 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTT--CACTCGT 178330 | || ||| ||||||||||| | || |||| | ||| ||| || || || Sbjct 519361 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGC 519418 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 ||||||||||| || | |||| | ||||||||||| Sbjct 519419 TTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 519455 >seq67 Length=682007 Score = 100 bits (110), Expect = 7e-16 Identities = 129/175 (74%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 || ||||||||||| | || || |||||||| ||||||||| | | ||||| ||||| Sbjct 568508 CCCAAGAAGCACGGTCGTGGTGGTCAATCTGCATTGCGTTTTGCACGTCTTCGTGAGGAA 568567 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCA---AA 139926 ||| | ||||||||| | | || ||||| ||| || | ||| ||| |||| | Sbjct 568568 AAGCGCCACAACTACGTCCGTAAGGTTGCTGAGCTGGCTGTTCAGAATTTCATCACCGCA 568627 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 |||| |||| ||| |||||||| ||||||| |||||||| || ||||||| Sbjct 568628 GACA--AAGT-CAATGTAGCTGGTATTATTTTGGCTGGTTCCGCCGATTTCAAGA 568679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148183129805