Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq236 313 3e-80 >seq236 Length=650478 Score = 313 bits (346), Expect = 3e-80 Identities = 1159/1791 (65%), Gaps = 40/1791 (2%) Strand=Plus/Plus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || |||||||| || | ||||||| | ||||| || |||||||| Sbjct 518170 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 518229 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || ||||||| |||| ||| |||||||||| || | ||| | Sbjct 518230 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 518289 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 || || || ||||| ||||| || || || || | || || || | |||||| Sbjct 518290 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 518349 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||||| | ||| || ||||| ||| ||||| | || ||| ||| | ||||| Sbjct 518350 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 518409 Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| |||||| ||| | | |||||||| ||||||||||| | || || ||||| Sbjct 518410 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTT 518469 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | || ||| ||| | | || | | | | || || || ||||| | Sbjct 518470 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 518529 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| |||||||||| ||| || | ||||| ||| || ||| || |||||||| | | Sbjct 518530 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 518589 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||| || | |||||||| || || ||||||||||| || || | ||||| Sbjct 518590 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 518649 Query 77246 ATTTCTGAGACCATGTGTTCTGAT-TTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 || | || ||| ||| | |||| | |||| || || | ||| |||||||| || | Sbjct 518650 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTA-TCCCAGTCCCAAAGGTCGG 518708 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG-CATATGATCCATTA 77363 |||| ||| |||| | ||||||||| || || || | || || ||| || | Sbjct 518709 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 518767 Query 77364 TATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAAC--TCGCTTCCAATGCTCC 77419 || || |||| |||| || || || ||| | || |||| || | ||| || | Sbjct 518768 TAGGTCTCAT-AGGTACCCAACTCCTT-AGCAA--TCTCAACGGACGATGTCAAAGCAGC 518823 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACG 77478 || ||||| |||||||| || | | ||||| | |||| |||||| ||||| | Sbjct 518824 GTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATG 518882 Query 77479 GATAATGTAAAAG-AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 | |||| || || | ||| ||||| || | || ||||| || | | | ||||||| | Sbjct 518883 G-TAATCGAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGA 518941 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | |||| || | || ||||| | || || || || ||||| || || || Sbjct 518942 TGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTG 519001 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || | ||||| ||||| |||| | || || | || || | ||||| | |||| Sbjct 519002 TTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCC 519061 Query 77658 TCTATAA----CAAACATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711 || | | || | ||||| | ||| || || || | ||||| || || ||| Sbjct 519062 TCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCA 519121 Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | | | | |||| | || || || || | ||| | || ||||| || Sbjct 519122 TCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGG 519181 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 || | |||||||||||| || ||||||| ||||| ||||| || || ||| | ||||| Sbjct 519182 TTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTC 519241 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTAT 77891 ||| | || | |||| ||| || | ||| | | |||| | || | ||| Sbjct 519242 TCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTT---TGATGGTCTTG--- 519295 Query 77892 CG-CCTCTCTCTT-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACA 77945 || ||||| ||| ||||| ||| || |||||| || || || | ||| Sbjct 519296 CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACA 519355 Query 77946 TCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACT 78005 ||| |||| ||||| |||||||| |||||||| | || ||| || | | | | ||| Sbjct 519356 TCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACA 519415 Query 78006 CGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCT 78065 || ||||| |||||||| || ||||| | ||| || ||||| |||| | |||| Sbjct 519416 CGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCT 519475 Query 78066 TCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 78125 || || || |||||| || || || ||||| | || ||| | ||||| || || Sbjct 519476 TCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCA 519535 Query 78126 AGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTG 78185 ||||| | ||| | | ||||| || || || || || || || | ||||| || ||| Sbjct 519536 AGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTG 519595 Query 78186 TTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATA 78245 ||||| |||||| | ||| || | || ||||| || | || || || || | || Sbjct 519596 TTATTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATG 519655 Query 78246 TAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGAT 78305 || ||| | || || || | |||| | || || ||||| || | ||||| Sbjct 519656 TATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAG 519715 Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTA 78365 || | ||| || || | ||||| || ||||| || ||||| || ||| |||| | | Sbjct 519716 ATCATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCA 519775 Query 78366 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGAT 78425 | || || || || | || || || || || || | ||| || || Sbjct 519776 ATGAGGAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAG 519835 Query 78426 GCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC- 78484 || || || || |||| | || | || ||||| || ||||| || || || || Sbjct 519836 GCGTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCG 519895 Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || | ||||| || || || |||||||| | ||| ||||| || | ||| Sbjct 519896 TCACCG-TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 519945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666568376480