Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq89 113 1e-19 seq247 107 4e-18 seq112 107 4e-18 >seq89 Length=741344 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| || || |||||||||||||| |||| | || | |||||| Sbjct 321533 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 321592 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||| || | | |||||| ||||| || Sbjct 321593 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 321652 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | | || || || || || || || || ||| Sbjct 321653 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 321712 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || ||||||| |||||| Sbjct 321713 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744 >seq247 Length=916335 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || || |||||||| ||||||||||| || | || ||| | ||||| Sbjct 302612 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 302671 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | |||||||||| | ||| || ||||| ||| Sbjct 302672 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 302731 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| ||| || | || | | | ||||| ||| || || | || || || Sbjct 302732 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 302791 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||| ||||| Sbjct 302792 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823 Score = 102 bits (112), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCCCGGCG 151970 ||| || || ||||||||||| | | |||||| ||||| || | ||||| || || Sbjct 302404 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTT--CCAGCA 302461 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 ||||| | | ||| ||||||| | ||| || ||||| |||||||| ||| |||||| Sbjct 302462 AAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACA 302521 Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 | || | | | ||||| || ||||| | ||||| || || || || | |||||| Sbjct 302522 TTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTG 302581 Query 152091 ACGAAGACCTGCAT 152104 ||||||| |||||| Sbjct 302582 ACGAAGATCTGCAT 302595 Score = 102 bits (112), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||||||||||||||| ||| | || | |||||||| | Sbjct 302845 CAAG-TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGA 302903 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| | | || || |||| | || || ||||| || || | Sbjct 302904 GTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGA 302963 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| || ||| || |||||||| || || |||| Sbjct 302964 TCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGC 303023 Query 152077 CCGTGAGAGTCTTCACGA 152094 | ||||||||||| |||| Sbjct 303024 CAGTGAGAGTCTTGACGA 303041 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||||||||| ||||| |||||||| ||| || || | ||||| Sbjct 303119 GAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATC 303178 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || |||||||| | | ||| ||||||| | ||||| ||||| || Sbjct 303179 TTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 303238 Query 152012 TTGAATTTT 152020 ||||| || Sbjct 303239 CTGAATCTT 303247 >seq112 Length=1448063 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || || |||||||| ||||||||||| || | || ||| | ||||| Sbjct 1211577 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 1211518 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | |||||||||| | ||| || ||||| ||| Sbjct 1211517 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 1211458 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| ||| || | || | | | ||||| ||| || || | || || || Sbjct 1211457 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 1211398 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||| ||||| Sbjct 1211397 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366 Score = 102 bits (112), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||||||||||||||| ||| | || | |||||||| | Sbjct 1211344 CAAG-TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGA 1211286 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| | | || || |||| | || || ||||| || || | Sbjct 1211285 GTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGA 1211226 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| || ||| || |||||||| || || |||| Sbjct 1211225 TCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGC 1211166 Query 152077 CCGTGAGAGTCTTCACGA 152094 | ||||||||||| |||| Sbjct 1211165 CAGTGAGAGTCTTGACGA 1211148 Score = 102 bits (112), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCCCGGCG 151970 ||| || || ||||||||||| | | |||||| ||||| || | ||||| || || Sbjct 1211785 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTT--CCAGCA 1211728 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 ||||| | | ||| ||||||| | ||| || ||||| |||||||| ||| |||||| Sbjct 1211727 AAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACA 1211668 Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 | || | | | ||||| || ||||| | ||||| || || || || | |||||| Sbjct 1211667 TTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTG 1211608 Query 152091 ACGAAGACCTGCAT 152104 ||||||| |||||| Sbjct 1211607 ACGAAGATCTGCAT 1211594 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||||||||| ||||| |||||||| ||| || || | ||||| Sbjct 1211070 GAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATC 1211011 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || |||||||| | | ||| ||||||| | ||||| ||||| || Sbjct 1211010 TTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 1210951 Query 152012 TTGAATTTT 152020 ||||| || Sbjct 1210950 CTGAATCTT 1210942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153817000684447