Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq89 131 1e-25 seq247 118 8e-22 seq112 118 8e-22 >seq89 Length=741344 Score = 131 bits (144), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||||||||||||||||| |||| || ||| | || || Sbjct 321536 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 321595 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| ||| |||||||| | || | || ||||| ||| Sbjct 321596 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 321655 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| || | |||||| ||||| | || || || | Sbjct 321656 ATCTTGGACTTGACATTGT--CGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTT 321713 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 | ||||||||||| || |||||||| ||||||| Sbjct 321714 TACCCGTGAGGGTTTTGACGAAGATCTGCATGA 321746 >seq247 Length=916335 Score = 118 bits (130), Expect = 8e-22 Identities = 158/214 (74%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||| | ||||||||||| || ||||||||||| | ||||| || | || Sbjct 302386 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCT-GC-CATCC 302443 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| || ||||||||||| ||||| || || | || | ||| ||||| || Sbjct 302444 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 302503 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| || ||| | ||||| || | |||||||| |||| ||||| | Sbjct 302504 TGAATCTTTGACTTGACATTGT--CAATGGTATCTGACGATTCCACTTCCAATGTAATGG 302561 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || | ||||| |||||||| ||||| Sbjct 302562 TCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 302595 Score = 107 bits (118), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||| || |||||||||||||| ||| || ||| | || || Sbjct 302842 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 302901 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || || ||||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 302902 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTG 302961 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| || || ||||| | || || ||| Sbjct 302962 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTC 303019 Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327 || || ||||| ||||| |||| Sbjct 303020 TTGCCAGTGAGAGTCTTGACGA 303041 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| ||| || ||||||||||| || | || ||| | || || Sbjct 302615 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 302674 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | ||| ||||| || | || | ||| ||||| || Sbjct 302675 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 302734 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || || | ||| | ||||| || | || || ||||||| || || ||||| Sbjct 302735 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 302793 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||| |||||||||||||| Sbjct 302794 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823 >seq112 Length=1448063 Score = 118 bits (130), Expect = 8e-22 Identities = 158/214 (74%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||| | ||||||||||| || ||||||||||| | ||||| || | || Sbjct 1211803 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCT-GC-CATCC 1211746 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| || ||||||||||| ||||| || || | || | ||| ||||| || Sbjct 1211745 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 1211686 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| || ||| | ||||| || | |||||||| |||| ||||| | Sbjct 1211685 TGAATCTTTGACTTGACATTGT--CAATGGTATCTGACGATTCCACTTCCAATGTAATGG 1211628 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || | ||||| |||||||| ||||| Sbjct 1211627 TCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594 Score = 107 bits (118), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||| || |||||||||||||| ||| || ||| | || || Sbjct 1211347 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 1211288 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || || ||||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 1211287 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTG 1211228 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| || || ||||| | || || ||| Sbjct 1211227 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTC 1211170 Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327 || || ||||| ||||| |||| Sbjct 1211169 TTGCCAGTGAGAGTCTTGACGA 1211148 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| ||| || ||||||||||| || | || ||| | || || Sbjct 1211574 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 1211515 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | ||| ||||| || | || | ||| ||||| || Sbjct 1211514 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 1211455 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || || | ||| | ||||| || | || || ||||||| || || ||||| Sbjct 1211454 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 1211396 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||| |||||||||||||| Sbjct 1211395 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||| |||||||| || | || || |||| || || ||||| ||||| |||| Sbjct 15704 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 15645 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 15644 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15585 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || || | ||| || ||||| | || || ||||||||||| |||||||| || Sbjct 15584 --CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGAC 15527 Query 44326 GAAG 44329 |||| Sbjct 15526 GAAG 15523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989272442569