Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq89 131 1e-25
seq247 118 8e-22
seq112 118 8e-22
>seq89
Length=741344
Score = 131 bits (144), Expect = 1e-25
Identities = 158/213 (74%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||||||||||||||||| |||| || ||| | || ||
Sbjct 321536 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 321595
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| ||||||| ||| |||||||| | || | || ||||| |||
Sbjct 321596 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 321655
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| || | |||||| ||||| | || || || |
Sbjct 321656 ATCTTGGACTTGACATTGT--CGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTT 321713
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339
| ||||||||||| || |||||||| |||||||
Sbjct 321714 TACCCGTGAGGGTTTTGACGAAGATCTGCATGA 321746
>seq247
Length=916335
Score = 118 bits (130), Expect = 8e-22
Identities = 158/214 (74%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185
||||| ||| | ||||||||||| || ||||||||||| | ||||| || | ||
Sbjct 302386 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCT-GC-CATCC 302443
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| |||||| || ||||||||||| ||||| || || | || | ||| ||||| ||
Sbjct 302444 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 302503
Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303
||||| ||| || ||| | ||||| || | |||||||| |||| ||||| |
Sbjct 302504 TGAATCTTTGACTTGACATTGT--CAATGGTATCTGACGATTCCACTTCCAATGTAATGG 302561
Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||| || | ||||| |||||||| |||||
Sbjct 302562 TCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 302595
Score = 107 bits (118), Expect = 1e-18
Identities = 146/202 (72%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| || |||||||||||||| ||| || ||| | || ||
Sbjct 302842 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 302901
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| || || || || ||||||||||| || ||||| | ||| | ||| ||||| |||
Sbjct 302902 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTG 302961
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | |||||||||| || || ||||| | || || |||
Sbjct 302962 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTC 303019
Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327
|| || ||||| ||||| ||||
Sbjct 303020 TTGCCAGTGAGAGTCTTGACGA 303041
Score = 102 bits (112), Expect = 6e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| || || ||| ||| || ||||||||||| || | || ||| | || ||
Sbjct 302615 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 302674
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||| | ||| ||||| || | || | ||| ||||| ||
Sbjct 302675 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 302734
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || || | ||| | ||||| || | || || ||||||| || || |||||
Sbjct 302735 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 302793
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || ||||| ||||||||||||||
Sbjct 302794 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823
>seq112
Length=1448063
Score = 118 bits (130), Expect = 8e-22
Identities = 158/214 (74%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185
||||| ||| | ||||||||||| || ||||||||||| | ||||| || | ||
Sbjct 1211803 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCT-GC-CATCC 1211746
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| |||||| || ||||||||||| ||||| || || | || | ||| ||||| ||
Sbjct 1211745 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 1211686
Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303
||||| ||| || ||| | ||||| || | |||||||| |||| ||||| |
Sbjct 1211685 TGAATCTTTGACTTGACATTGT--CAATGGTATCTGACGATTCCACTTCCAATGTAATGG 1211628
Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||| || | ||||| |||||||| |||||
Sbjct 1211627 TCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594
Score = 107 bits (118), Expect = 1e-18
Identities = 146/202 (72%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| || |||||||||||||| ||| || ||| | || ||
Sbjct 1211347 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 1211288
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| || || || || ||||||||||| || ||||| | ||| | ||| ||||| |||
Sbjct 1211287 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTG 1211228
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | |||||||||| || || ||||| | || || |||
Sbjct 1211227 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTC 1211170
Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327
|| || ||||| ||||| ||||
Sbjct 1211169 TTGCCAGTGAGAGTCTTGACGA 1211148
Score = 102 bits (112), Expect = 6e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| || || ||| ||| || ||||||||||| || | || ||| | || ||
Sbjct 1211574 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 1211515
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||| | ||| ||||| || | || | ||| ||||| ||
Sbjct 1211514 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 1211455
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || || | ||| | ||||| || | || || ||||||| || || |||||
Sbjct 1211454 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 1211396
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || ||||| ||||||||||||||
Sbjct 1211395 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366
Score = 93.3 bits (102), Expect = 3e-14
Identities = 132/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
||||||| |||||||| || | || || |||| || || ||||| ||||| ||||
Sbjct 15704 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 15645
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||||||| || || || | || | || ||||| ||| ||||| ||| || |||
Sbjct 15644 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15585
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || || || | ||| || ||||| | || || ||||||||||| |||||||| ||
Sbjct 15584 --CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGAC 15527
Query 44326 GAAG 44329
||||
Sbjct 15526 GAAG 15523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989272442569
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |