Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq89 181 3e-40 seq247 147 5e-30 seq112 147 5e-30 >seq89 Length=741344 Score = 181 bits (200), Expect = 3e-40 Identities = 164/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || ||||| |||||||||||||| ||| ||| || Sbjct 321741 CAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 321682 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || |||||||| || || |||||| Sbjct 321681 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAA 321622 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || |||||||||||| | || ||| |||| || ||| || Sbjct 321621 CGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 321562 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 321561 CAAAAGGAATCCACTCTTCA-CTTG 321538 >seq247 Length=916335 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || ||||| | ||||| || ||||| Sbjct 302820 CAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCAGAT 302761 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| |||||| || || || || || ||||| |||||||||||| Sbjct 302760 ACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAGCAA 302701 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || || || || ||||| | ||||| | || || ||| || Sbjct 302700 CGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAACATC 302641 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || ||||||||| Sbjct 302640 CAGAAAGAGTCCACACTGCAT 302620 Score = 141 bits (156), Expect = 2e-28 Identities = 151/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || |||||||| || || || ||||| || ||||| || || |||||||||| Sbjct 303041 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 302982 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||| |||||||| || || || |||||||| || ||||| | | Sbjct 302981 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 302922 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || ||||| ||||||||||| | || || ||| || ||| ||||||||| Sbjct 302921 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 302862 Query 178111 AATCAACACTGCATCTTG 178128 |||| || || || |||| Sbjct 302861 AATCCACCCTTCA-CTTG 302845 Score = 116 bits (128), Expect = 9e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || | || |||||||| ||||| || Sbjct 303309 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGA 303250 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||||||||| || || ||||| || |||||||| || || | |||||||| || | Sbjct 303249 GCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 303190 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121 |||| || |||||||| | || |||| ||| || ||| | ||||| || || || || Sbjct 303189 AACAACTTGAAGATGGCCGTAC-CTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 303131 Query 178122 CATCTTGT 178129 ||||| || Sbjct 303130 CATCTCGT 303123 >seq112 Length=1448063 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || ||||| | ||||| || ||||| Sbjct 1211369 CAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCAGAT 1211428 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| |||||| || || || || || ||||| |||||||||||| Sbjct 1211429 ACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAGCAA 1211488 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || || || || ||||| | ||||| | || || ||| || Sbjct 1211489 CGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAACATC 1211548 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || ||||||||| Sbjct 1211549 CAGAAAGAGTCCACACTGCAT 1211569 Score = 141 bits (156), Expect = 2e-28 Identities = 151/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || |||||||| || || || ||||| || ||||| || || |||||||||| Sbjct 1211148 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 1211207 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||| |||||||| || || || |||||||| || ||||| | | Sbjct 1211208 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 1211267 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || ||||| ||||||||||| | || || ||| || ||| ||||||||| Sbjct 1211268 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 1211327 Query 178111 AATCAACACTGCATCTTG 178128 |||| || || || |||| Sbjct 1211328 AATCCACCCTTCA-CTTG 1211344 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || ||||| || |||||||| ||||| || ||| || || || Sbjct 15524 TTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTATT 15583 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || ||||| || |||||||| ||||| | Sbjct 15584 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTG 15643 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||||||||| || ||||| || ||| | || ||| | || || ||| | ||||| Sbjct 15644 ATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 15702 Score = 116 bits (128), Expect = 9e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || | || |||||||| ||||| || Sbjct 1210880 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGA 1210939 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||||||||| || || ||||| || |||||||| || || | |||||||| || | Sbjct 1210940 GCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 1210999 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121 |||| || |||||||| | || |||| ||| || ||| | ||||| || || || || Sbjct 1211000 AACAACTTGAAGATGGCCGTAC-CTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 1211058 Query 178122 CATCTTGT 178129 ||||| || Sbjct 1211059 CATCTCGT 1211066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727236338858