Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq208 159 7e-34 >seq208 Length=98604 Score = 159 bits (176), Expect = 7e-34 Identities = 188/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 230387 TCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCC 230446 |||| ||||| || ||||| | |||| | || ||| | || ||| |||| ||| | Sbjct 39382 TCATCACAGAGGCTGTTGAGATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCAC 39441 Query 230447 TTATTGGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||||||||||| |||||| ||| || |||||||| ||||| ||||| || || Sbjct 39442 TTCTTGGCATGAACGC-GAACTTGATGAAGCAATACATCGAGTTCGTTGCCGATCGTCTT 39500 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || |||||| ||||||| |||||||| ||| ||||| || | || |||||| Sbjct 39501 CTAGTCGCTCTTGGTAACGAGAAGGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAG 39560 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||| || || ||| ||||| ||||||||||| ||| | || ||||||| |||| | Sbjct 39561 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAG 39620 Query 230626 CCTGGTGTGATG 230637 ||||||| ||| Sbjct 39621 GCTGGTGTTATG 39632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820869171530