Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq208 102 8e-17
>seq208
Length=98604
Score = 102 bits (112), Expect = 8e-17
Identities = 337/514 (66%), Gaps = 14/514 (3%)
Strand=Plus/Minus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
||||| |||| ||| | || ||||||||||| || || || ||| || || || |||
Sbjct 39616 TGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCC 39557
Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033
|| || || || || || | || | | ||| || || || | | |
Sbjct 39556 ATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACTAGAAGA 39497
Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATAAGTCG 16092
| ||| || || || || || ||||| ||| |||| ||| || || || | |||| |
Sbjct 39496 CGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCG-TTCATGCCAAGAAGT-G 39439
Query 16093 TACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151
|| |||||||| | || || |||| |||||| ||| |||| || ||| | |||| ||
Sbjct 39438 CACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGACAT 39379
Query 16152 C--GGT--GGCT-CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206
| || | || | || || ||||||| || | ||| || | || |||||
Sbjct 39378 CTTGGACAGCCTGCTTGCTTG-GACGGTGC----TTCAAGTGGGAGAAGAGGAGGCACGC 39324
Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266
||||||| ||| || ||||| || | | ||| || || ||||| ||||| | || |
Sbjct 39323 GAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGC 39264
Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326
||| || || ||||| | |||||| || | ||| ||||| || ||||| || ||
Sbjct 39263 CATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCC 39204
Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386
|||||||| |||||||| | | || | || | |||| | ||| | |||||||
Sbjct 39203 CTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGAATCCA 39144
Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420
| | |||| |||||||| | || || |||
Sbjct 39143 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAA 39110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511412923290920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |