Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq208 152 5e-32 seq199 132 5e-26 seq162 107 2e-18 seq153 84.2 2e-11 >seq208 Length=98604 Score = 152 bits (168), Expect = 5e-32 Identities = 205/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||| | || ||| | ||| || Sbjct 38721 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 38780 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || |||||| ||| ||| | | | || || | |||||| |||||||| Sbjct 38781 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 38840 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || ||||| || |||||| || ||||||||||| || |||||||| Sbjct 38841 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 38900 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || || | ||||||| || ||||||||||| || || || ||| Sbjct 38901 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 38960 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| |||| || || ||||||||| || ||| Sbjct 38961 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATAC 39005 Score = 116 bits (128), Expect = 4e-21 Identities = 267/397 (67%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 |||| ||||| || || || || || |||||| ||||||| || ||||| | | Sbjct 39175 AGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCTTCTA 39234 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | || ||||||||||| || ||| | ||| | || || |||||| ||| |||||||||| Sbjct 39235 TCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCATCT 39294 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215 || | || || ||||| ||| |||||| || || | || ||| || ||| ||| | Sbjct 39295 CCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTCCCACTTGAAGCACC 39354 Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275 | || ||| | | ||| || || |||| || || || | ||||| || | Sbjct 39355 GTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGATCGAACAAGAAT 39414 Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAA-ACGATGTCGCA 117333 || | ||||| || || || |||| || || || | || ||||| |||| ||| Sbjct 39415 TCTTGACCGAGGCTCTTCCTTGTGC-ACTTCTTGGCATGAA-CGCGAACTTGATGAAGCA 39472 Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393 ||||||||||||||| ||||| | || || ||| || | || ||| ||||| Sbjct 39473 ATACATCGAGTTCGTTGCCGATCGTCTTCTAGTCGCTCTTGGTAACGAGAAGGTGTACAA 39532 Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 | ||||||| | ||||| ||| | ||||||| Sbjct 39533 GTCTGCCAACCCATTCGACTTCATGGAGAACATCTCC 39569 >seq199 Length=820378 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||| || | Sbjct 1628 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1687 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || || | ||||| ||||| ||||| | || ||| Sbjct 1688 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1747 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| || || || || | |||||||| |||||||||| Sbjct 1748 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1807 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| ||||| |||| || || Sbjct 1808 ATCCAAAAGGAATCCACTCTTCA 1830 >seq162 Length=634359 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| ||||| ||| ||| | | | | |||| | ||| Sbjct 34371 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG-TAAAG 34313 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| || || ||||| || ||| ||||||| || || | |||| ||| ||| Sbjct 34312 AGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGC 34253 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 ||||| || || || | || ||| | | |||||||||||| || |||||| | || || Sbjct 34252 AAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 34193 Query 40891 CATCTAGT 40898 ||||| || Sbjct 34192 CATCTCGT 34185 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| |||||||| | || ||||| | |||||| | | Sbjct 34103 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 34044 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | ||||| ||||| || || |||| || ||||| | | Sbjct 34043 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 33984 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || ||||| || || || | |||||||| | ||||||||||||||| || | Sbjct 33983 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 33924 Query 40880 AGGCCACGCTGCATCTAGTGTTGCGC 40905 | |||| || || | ||| | ||| Sbjct 33923 AATCCACCCTTCACTTGGTGCTCCGC 33898 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || || ||||| | || || || | | Sbjct 33885 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 33826 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | || ||| || | || || ||||| ||||| ||||||| Sbjct 33825 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 33767 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || || || || || | ||||| || |||||||| Sbjct 33766 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 33707 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||| ||| |||| |||||| Sbjct 33706 CATCCAGAAAGAGTCCACACTGCAT 33682 >seq153 Length=332877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||||| ||||| || || || ||||| || ||||||||| | || ||||| || | || Sbjct 175361 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 175420 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | | ||||| || || | ||||| ||||| || ||| ||||||| || Sbjct 175421 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 175480 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 ||| | |||| ||| || || || || || |||| || ||||| ||||||||||| Sbjct 175481 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 175540 Query 40872 CCAGAAGG 40879 || |||| Sbjct 175541 TCAAAAGG 175548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217712304560