Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq101 87.8 4e-12
>seq101
Length=648506
Score = 87.8 bits (96), Expect = 4e-12
Identities = 181/267 (68%), Gaps = 2/267 (1%)
Strand=Plus/Minus
Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833
|||| || || || | ||||||||| | || ||||| || || ||| || |||
Sbjct 110835 TGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTA 110776
Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG- 94892
||||||||||| ||||| ||||| || | | | | |||||||| || ||||| ||
Sbjct 110775 TCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGT 110716
Query 94893 GGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952
| |||| ||| ||| || ||||| ||||| || || || || || | | ||
Sbjct 110715 GCTTGTG-GTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATTTGTTGGA 110657
Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012
||| || | || || |||||| | | ||| || |||||||| || || || ||
Sbjct 110656 CATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAAC 110597
Query 95013 ACGCATAATCATGTCCTGAGGGCGCTC 95039
|||||| ||||| | ||| || || ||
Sbjct 110596 ACGCATGATCATTTGCTGTGGACGTTC 110570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989581071140605
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |