Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq101 212 8e-50
>seq101
Length=648506
Score = 212 bits (234), Expect = 8e-50
Identities = 1140/1785 (64%), Gaps = 53/1785 (3%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| |||||||| || | ||||||||| | ||||| || |||||||| || || || |||
Sbjct 112332 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 112273
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919
|| | |||| ||| |||||||| || | ||| || | | || || ||
Sbjct 112272 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTG-TGGGGTCTTTCAT 112214
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
|||||| ||||| || || || || | ||||| || | || || ||||||| |
Sbjct 112213 GTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAAC 112154
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
|| || ||| | ||| ||||| | || || |||| | ||| || || ||||||
Sbjct 112153 AATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 112094
Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
||| | | || ||||| || |||||||| || || || | || || || | ||
Sbjct 112093 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 112034
Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156
||||||| | ||| | | | | || || || ||||| ||||| ||||||||
Sbjct 112033 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 111974
Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216
|| ||| || | ||||| ||| || ||| || || ||||| | |||| || ||
Sbjct 111973 AGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACC 111914
Query 71217 CAAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275
| |||||||| || || || | || |||||||| || || | | ||| || | | ||
Sbjct 111913 GAGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 111855
Query 71276 CATGT-----GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330
| ||| ||| |||||| ||| || || |||| | |||||| || | |||
Sbjct 111854 CGTGTTGTTTGAT-GGATTT---CTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGT 111800
Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG-CGTATGATCCTGCATATGTAT 71389
||| ||| || | || | ||| ||| | || || |
Sbjct 111799 AACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAGGTCT 111741
Query 71390 CGTATGGT--CCTTCTTTTTCGGCTAGTTCACAACTCGCC-TCT-AATGCTCCATAATAA 71445
| || ||| || || || | | | || |||| | | | || || | | |||
Sbjct 111740 CATA-GGTACCCAACTCCTTAG-CAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAA 111685
Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATT 71504
|| |||||||| || | | ||||| | |||| ||||| || |||||||| ||||
Sbjct 111684 ATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATC 111627
Query 71505 TAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563
||||| | ||| || || || | |||||||| || | | ||||||||| || |
Sbjct 111626 GAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGA 111567
Query 71564 TATTAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622
||| | |||| | | ||||| | || || || || || || || || || || |
Sbjct 111566 AATT-GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAG 111508
Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT 71679
|||||||| | |||| || || | || || | ||||| | || | |||
Sbjct 111507 TTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTC 111448
Query 71680 AT-TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736
|| | || | | ||| || |||| || |||| ||||| || || |||| |
Sbjct 111447 ATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGG 111388
Query 71737 TCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796
| | |||| | |||||| ||||| | ||| | ||||| || | || | |
Sbjct 111387 GCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTT 111328
Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856
|| || ||||| ||||| || |||||||| ||||| || || ||| | || || ||| |
Sbjct 111327 TGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTT 111268
Query 71857 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTT 71915
|||| || | ||| | | ||| | | | || || || | |||| | ||||
Sbjct 111267 TGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTA 111211
Query 71916 TTCTCTTTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973
|| ||| || | | ||| | ||| |||||||| || | ||| | ||
Sbjct 111210 CCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAAC 111151
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031
|||||||||||||| || ||||| | || ||| || | | || ||| || || ||||
Sbjct 111150 CCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCA 111093
Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTT 72090
| |||||||| |||||||| | || ||| || ||||| | || | || || ||
Sbjct 111092 TGAAGAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTG 111034
Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150
|| |||||| || || |||||| | | || ||| | ||||| || || | ||
Sbjct 111033 CCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAG 110974
Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210
| || | | || || || |||||||| || || || | ||||||||| ||||||||
Sbjct 110973 ACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTG 110914
Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270
|||||| | ||| || | || || ||||| ||| ||||| |||| ||| ||
Sbjct 110913 AAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 110854
Query 72271 CCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330
||| ||||||| || || ||| ||||| || || || || |||||||||| |
Sbjct 110853 CCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATA 110794
Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390
|| ||| || | |||||||| || || || |||||||| ||| |||| | || ||
Sbjct 110793 GCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGG 110734
Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
|| || || | || | || || || || | ||||| || |||||
Sbjct 110733 AAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGT 110674
Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTG 72509
|| || |||| | |||| || ||||| |||||||| || || ||||| || |
Sbjct 110673 GTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG 110614
Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554
|| || || || || |||||||| | ||| ||||| || | |||
Sbjct 110613 -TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 110570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671137262085560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |