Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq208 129 9e-25 >seq208 Length=98604 Score = 129 bits (142), Expect = 9e-25 Identities = 238/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| || || ||||| | |||||| |||| || Sbjct 38721 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 38780 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||||||| |||||||| | | | | ||| |||||| | || || || Sbjct 38781 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 38840 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||| | | || ||||| || | ||||| ||||| |||||||| || | ||| || || Sbjct 38841 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGA-GCG 38899 Query 125198 ATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||| | | |||| | || || |||| ||| ||||| ||||| |||||||| ||| Sbjct 38900 CTTCAGTGGTGAAGTTCA-AATCCCCGAGG-CTCGTTGCTTCTACGGTTTCCAAATTATG 38957 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-- 125313 || |||||| | ||||| |||| |||||| || || || | |||||| || | Sbjct 38958 ATGGAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAA 39017 Query 125314 -CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | ||||| |||| || ||||| || ||||| || || Sbjct 39018 GCCCAACG--AACATAT-CTCTTCAATGCAATTGAGAC 39052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057060191560