Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq162 104 2e-17 seq199 102 6e-17 >seq162 Length=634359 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| |||||||| |||||||| ||||| || | | | ||||| Sbjct 33905 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 33964 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | |||||||||||||| || ||||| || || ||||| Sbjct 33965 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGG 34024 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| ||| || || || | || ||||| || Sbjct 34025 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTG 34084 Query 15335 CCTGTCAGAGTTTTTAC 15351 || || ||||| || || Sbjct 34085 CCAGTGAGAGTCTTGAC 34101 Score = 100 bits (110), Expect = 2e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || ||||| |||||||| ||||| | | | | ||||| | ||| Sbjct 34190 ATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTG 34249 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| ||| | ||||| || |||||||| |||||||| || || || ||| || Sbjct 34250 TTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTT 34309 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||||||||| | || ||||||||||| || || || | ||| ||||| || || || Sbjct 34310 GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 34369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 || || || ||||||||||| ||| |||| | || || || || || ||||| | Sbjct 33467 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAG 33526 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||| || |||||||| ||| || || || ||||| ||| || ||| ||| | Sbjct 33527 ATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTG 33586 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || |||||||| ||| || || || |||||||| || || |||| ||| || || Sbjct 33587 TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACG 33646 Query 15353 AAAATTTGCATA 15364 || || |||||| Sbjct 33647 AAGATCTGCATA 33658 >seq199 Length=820378 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || ||||| |||||||| ||| || | | | ||||| Sbjct 1836 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 1777 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | |||| |||||| || || ||| ||||| || ||||| Sbjct 1776 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 1717 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || |||||||| ||| || || | ||| ||||||||| Sbjct 1716 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTA 1657 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || || ||||| Sbjct 1656 CCCGTGAGGGTTTTGACGAAGATCTGCAT 1628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178180352371