Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq210 100 3e-16 seq188 100 3e-16 >seq210 Length=638276 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 5345 TCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTG 5404 || |||| ||| ||||| || || ||| |||| ||||||||||| |||| || | Sbjct 67420 TCGCCCTCCTTCACCTCGAAATCAGTGTCTCCGTGGTTAAACAGCAGCACCTTTACTTGA 67361 Query 5405 CCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGG 5464 || || || || | ||||| ||||| |||||| |||||| | ||||||| || ||| Sbjct 67360 CCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGTTTGGATGCTAGG 67301 Query 5465 CCGGAACGTGGTGCTATGCGTCCGT 5489 ||||| || || ||||||||||||| Sbjct 67300 CCGGAGCGGGGAGCTATGCGTCCGT 67276 >seq188 Length=894524 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 5345 TCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTG 5404 || |||| ||| ||||| || || ||| |||| ||||||||||| |||| || | Sbjct 773291 TCGCCCTCCTTCACCTCGAAATCAGTGTCTCCGTGGTTAAACAGCAGCACCTTTACTTGA 773350 Query 5405 CCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGG 5464 || || || || | ||||| ||||| |||||| |||||| | ||||||| || ||| Sbjct 773351 CCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGTTTGGATGCTAGG 773410 Query 5465 CCGGAACGTGGTGCTATGCGTCCGT 5489 ||||| || || ||||||||||||| Sbjct 773411 CCGGAGCGGGGAGCTATGCGTCCGT 773435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447749107120720