Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq169 118 2e-22 seq211 109 9e-20 seq156 109 9e-20 >seq169 Length=386432 Score = 118 bits (130), Expect = 2e-22 Identities = 87/99 (88%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| |||| |||||| |||||||||||||| ||||| ||||| ||||| Sbjct 382137 GCTAAGCGTCATCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACAAAGCCTGCTAT 382195 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| ||||||||||| || ||||||||| |||| Sbjct 382196 CAGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 382234 >seq211 Length=66370 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | |||| ||||||||||| ||||||||||||||||| Sbjct 49803 GCCAAGCGTCACCGCAAGATTT-TGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 49745 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| |||||||||||||| ||||||||| |||| Sbjct 49744 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 49706 Score = 105 bits (116), Expect = 1e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| | Sbjct 49592 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 49533 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || ||||| || || ||||| |||||||||||| | || ||||||| | Sbjct 49532 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 49473 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | || || |||||||||| |||| ||||| || |||| Sbjct 49472 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 49430 >seq156 Length=528201 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | |||| ||||||||||| ||||||||||||||||| Sbjct 352848 GCCAAGCGTCACCGCAAGATTT-TGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 352790 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| |||||||||||||| ||||||||| |||| Sbjct 352789 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 352751 Score = 105 bits (116), Expect = 1e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| | Sbjct 352637 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 352578 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || ||||| || || ||||| |||||||||||| | || ||||||| | Sbjct 352577 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 352518 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | || || |||||||||| |||| ||||| || |||| Sbjct 352517 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 352475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074988795083