Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq169 118 2e-22
seq211 109 9e-20
seq156 109 9e-20
>seq169
Length=386432
Score = 118 bits (130), Expect = 2e-22
Identities = 87/99 (88%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||| |||| |||||| |||||||||||||| ||||| ||||| |||||
Sbjct 382137 GCTAAGCGTCATCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACAAAGCCTGCTAT 382195
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| ||||||||||| || ||||||||| ||||
Sbjct 382196 CAGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 382234
>seq211
Length=66370
Score = 109 bits (120), Expect = 9e-20
Identities = 85/99 (86%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | |||| ||||||||||| |||||||||||||||||
Sbjct 49803 GCCAAGCGTCACCGCAAGATTT-TGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 49745
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| |||||||||||||| ||||||||| ||||
Sbjct 49744 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 49706
Score = 105 bits (116), Expect = 1e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| |
Sbjct 49592 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 49533
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || ||||| || || ||||| |||||||||||| | || ||||||| |
Sbjct 49532 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 49473
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| | || || |||||||||| |||| ||||| || ||||
Sbjct 49472 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 49430
>seq156
Length=528201
Score = 109 bits (120), Expect = 9e-20
Identities = 85/99 (86%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | |||| ||||||||||| |||||||||||||||||
Sbjct 352848 GCCAAGCGTCACCGCAAGATTT-TGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 352790
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| |||||||||||||| ||||||||| ||||
Sbjct 352789 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 352751
Score = 105 bits (116), Expect = 1e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| |
Sbjct 352637 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 352578
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || ||||| || || ||||| |||||||||||| | || ||||||| |
Sbjct 352577 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 352518
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| | || || |||||||||| |||| ||||| || ||||
Sbjct 352517 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 352475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074988795083
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |