Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq162 93.3 4e-14 seq199 89.7 4e-13 >seq162 Length=634359 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || || | || |||||| | |||||||||||| | ||||| Sbjct 34089 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCC 34030 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| || || || ||||| |||||||| | |||| | || || || Sbjct 34029 AAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 33970 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||| | | | | ||||| || ||||| ||||||||||| || |||| Sbjct 33969 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 33910 Query 24195 TTAGTG 24200 || ||| Sbjct 33909 TTGGTG 33904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| ||| ||| |||||||| | || || |||||| || Sbjct 34357 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 34298 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || || || || |||||| | |||| | || ||||| ||||| |||||| Sbjct 34297 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 34238 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | | ||||| || ||||||||||| || ||||| Sbjct 34237 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 34197 >seq199 Length=820378 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || ||| |||| || || || Sbjct 1628 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1687 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 1688 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1747 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | || |||||||||||||||||||| | | | | ||| || ||| Sbjct 1748 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1807 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || |||| || || Sbjct 1808 ATCCAAAAGGAATCCACTCTTCACTTGGT 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934789595805