Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 140 2e-28 seq162 114 9e-21 seq199 105 4e-18 >seq2 Length=1043738 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 894995 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 895054 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 895055 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 895089 >seq162 Length=634359 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | |||||| || | |||||||||||| ||||| ||||||||||| | | | | Sbjct 33442 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCC 33501 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || || ||||| ||||| || | || ||||| || | |||| || || || Sbjct 33502 ATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 33561 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||| ||| ||| ||||| | | |||||| ||| ||||| |||||||| Sbjct 33562 GTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAAT 33621 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || || ||||| |||||||| Sbjct 33622 GGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 33657 >seq199 Length=820378 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| ||||||||| |||||||| || ||||| || || Sbjct 1854 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 1795 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | ||| || ||||| || || || ||||| ||||| | ||| Sbjct 1794 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 1735 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| || || ||| ||||| | || ||||| |||||| Sbjct 1734 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 1675 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || ||||||||||| | |||||| ||||| ||||||||| Sbjct 1674 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 1627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946257018961