Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq208 176 9e-39
>seq208
Length=98604
Score = 176 bits (194), Expect = 9e-39
Identities = 356/517 (69%), Gaps = 11/517 (2%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691
|| ||||| |||||||| || |||||||| ||| ||||| | || | | | | ||
Sbjct 39108 CCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCA-AGACAAAAACTCTAC 39166
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | || | ||||| || ||| | || || ||||||||||||||| || | ||
Sbjct 39167 CTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 39226
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
||| || ||||||||||||||| || | | |||| | || ||||| ||||| || ||
Sbjct 39227 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 39286
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871
|||||| | | || || || || |||| ||||| || |||||||| ||||| |||
Sbjct 39287 GCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCA 39343
Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
| | | |||| || ||| || |||| | ||||||| ||||| || |||||
Sbjct 39344 CTTGAAGCACCGTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGAT 39403
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACC 42990
||| | || ||| | || || | || || ||| | || | ||||||||| ||
Sbjct 39404 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTG-CACTTCTTGGCATGAACGCGAACT 39462
Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAG 43048
| ||| |||| |||||| ||| ||| ||||| | ||| || || | ||| ||
Sbjct 39463 TGATGAAGCAA-TACATCGAGTTCGTTGCCGATCGTCTTCTAGTCGCTCTTGGTAACGAG 39521
Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108
| | ||||| | | ||| |||||||| |||||||||||||| | | |||||
Sbjct 39522 AAG-GTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAA 39580
Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
||| ||||| ||||||||| | || | |||||||||
Sbjct 39581 GACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAG 39617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944336473220560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |