Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq101 113 6e-20 seq208 105 8e-18 >seq101 Length=648506 Score = 113 bits (124), Expect = 6e-20 Identities = 863/1380 (63%), Gaps = 34/1380 (2%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| ||| | |||| | | |||||||||||||| || |||||||| | Sbjct 112331 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 112272 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||| | | |||||| || | | |||| | ||| || || |||| Sbjct 112271 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 112212 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | |||||| ||| || || || | ||| || ||||| || ||||| | || || Sbjct 112211 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 112153 Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 || ||| | || | ||||| || || |||| || ||| || ||| |||| || Sbjct 112152 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 112094 Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823 | || ||||| ||||| ||||| | || || | | |||||| | | ||| Sbjct 112093 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 112034 Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||| | || || | ||||||| | || || ||||| || || || Sbjct 112033 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 111974 Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 || | | || | ||| |||||||| | |||||||| ||||||||||| ||| || Sbjct 111973 AGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAAC 111915 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 | | ||||| | ||| |||||| ||||| || || | ||| | |||||||||| || Sbjct 111914 CGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 111855 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTCTC 116057 | | ||| || ||| | | |||||||| | || | || | | ||| Sbjct 111854 CGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 111795 Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117 ||| ||||||| | || || || | || | || || || || | ||||| Sbjct 111794 CCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTC 111740 Query 116118 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGT 116177 ||| | ||| ||| || | || | || | || ||||| || || || Sbjct 111739 ATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGT 111680 Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG--GCAC 116235 || || || || || | |||||| || || ||||| | | || | | Sbjct 111679 TTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGC 111620 Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 ||| || |||| || |||||||| ||||||| | || || ||||| | | ||| Sbjct 111619 CAAAAAAG--CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTG 111562 Query 116296 GACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 ||||| || ||| ||||| || | || | || || | | | || | ||| | Sbjct 111561 CTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT 111503 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCAT 116413 | || || | || | || |||||||||| | |||| || | | ||| ||||| Sbjct 111502 GACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCAT 111446 Query 116414 TG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 ||| | | || || || || || |||| ||||| || | ||||| | Sbjct 111445 GTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGC 111386 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 || ||| || | |||||| || |||||||| || || ||||||||| | ||||||||| Sbjct 111385 AGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTG 111326 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 || ||| |||| || ||||||||||| ||||| |||| | || ||||| ||||| Sbjct 111325 GTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTG 111266 Query 116592 GGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCC 116648 | || |||||| | | ||| | | |||| | ||| ||| ||| || Sbjct 111265 AGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTACC 111209 Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCC 116708 |||| ||| || | ||||| || |||||||| || || | || | | ||| Sbjct 111208 TTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCC 111149 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 || | || || || | || | ||| | | || ||||| ||||||||||| Sbjct 111148 AGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAA 111089 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828 ||| || || ||||| | || |||| ||||| || ||| ||||||| | || || Sbjct 111088 GAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTG 111029 Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 || || | |||| || || | | ||| |||||||| || || || || || || Sbjct 111028 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 110969 >seq208 Length=98604 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | || Sbjct 39313 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 39254 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | |||||| || | | ||||| ||| ||||||||| ||||| ||| Sbjct 39253 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 39194 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || |||| ||||||| ||||||| Sbjct 39193 GCAAAAGCAACCAGACGCTGAGCAAAGG 39166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505428497960