Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq164 134 5e-26 seq162 98.7 4e-15 seq153 89.7 2e-12 >seq164 Length=741779 Score = 134 bits (148), Expect = 5e-26 Identities = 201/286 (70%), Gaps = 11/286 (4%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || ||||||||||||| || ||||| || ||||||| || ||||| ||||| | Sbjct 550581 ATGCTGTTGTTACTGTTCCCGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 550640 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || || || ||||| || ||||| || | |||| |||||||| || || || | Sbjct 550641 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 550700 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | ||||| | || || ||| |||| || | ||| Sbjct 550701 TTGCCTACGGTCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 550750 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||||||||| |||| ||||| || ||| || | || || || ||||| Sbjct 550751 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 550810 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||| | || |||||||| ||||| | || |||||||| | |||| Sbjct 550811 AAGTCTACAAATGGTGACACTCACTTGGGTGGTGAAGACTTCGATA 550856 >seq162 Length=634359 Score = 98.7 bits (108), Expect = 4e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || ||||| || || || |||||||| || || || || || | ||| | Sbjct 34103 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 34044 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | | | || || || || || ||||| || |||||||| |||||||||||||| | Sbjct 34043 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 33984 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 | ||| | || |||||||| |||||||| | || || || || || || | || | Sbjct 33983 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 33924 Query 391240 ATGCAACACTTCACTTAGT 391258 | | || |||||||| || Sbjct 33923 AATCCACCCTTCACTTGGT 33905 Score = 86.0 bits (94), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || ||||| |||||||| |||||||| || || ||||| || || || ||| |||| ||| Sbjct 34309 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 34250 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 |||||||||||||| | || ||| || || || ||| | ||||| Sbjct 34249 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGA 34203 >seq153 Length=332877 Score = 89.7 bits (98), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || || || || || || || || ||||| || || || |||||| Sbjct 175362 AATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGAT 175421 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||| | | || || || || || ||||| |||||||| || || |||||| Sbjct 175422 ACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAA 175481 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 ||||| || ||| | || || ||||| || || ||| |||| | | || || || ||| Sbjct 175482 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATT 175541 Query 391233 GATAAGG 391239 | |||| Sbjct 175542 CAAAAGG 175548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975712552490948