Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq101 174 2e-38 seq208 114 2e-20 >seq101 Length=648506 Score = 174 bits (192), Expect = 2e-38 Identities = 1149/1822 (63%), Gaps = 59/1822 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || |||||||| ||||| || | |||||| |||| Sbjct 112299 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 112240 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| || | ||| | |||||| || || ||||| || | || Sbjct 112239 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 112180 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||||||||| ||||| | | || ||| ||| |||||||| |||||| Sbjct 112179 GCACCACGATCAGCGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 112120 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 || | |||||| ||| | ||||||| |||||||||||||| |||||| || Sbjct 112119 TAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCA----TC 112064 Query 109648 ACC-ATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAAC 109703 | | |||| | | |||||| | | ||||| | || | | ||||| | | Sbjct 112063 AGCGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAG 112004 Query 109704 AAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761 || ||| ||| || || ||||| ||||| | || || |||||||||| Sbjct 112003 CAGCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTA 111946 Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821 | ||||| ||||| || ||||| ||| || || ||||| | ||| ||||| ||| Sbjct 111945 GAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGC 111886 Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881 || ||||| | ||| | |||||| |||| ||| | | ||| | | | || Sbjct 111885 ATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGT-TGTTTGATGGATTTCTTCAAGCT 111827 Query 109882 -TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTAC 109940 ||||| || || | | || | || ||| |||||||||| ||||||| | Sbjct 111826 ATCCCAGTCCCAAAGGTCGGTAGGTGTAA-CTC-----CCCACATATCGTATTGAAGTTC 111773 Query 109941 ACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC 110000 |||| | |||| || || | | | |||| || | ||| ||| || | ||| Sbjct 111772 GCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAATCTC 111713 Query 110001 ---GGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAG 110057 ||| || | | | || || || || ||||| || || || ||| || ||| Sbjct 111712 AACGGACGATGTC---AAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTT---GAG 111659 Query 110058 GCGAGACTCTTCAC---AGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACC 110114 | | ||||| | || || || | | | | | ||| |||| || ||||| Sbjct 111658 GTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAGCATCGGCAAGACC 111599 Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174 |||||||||| | | || || ||||| | || || || | ||||| Sbjct 111598 TTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGG 111539 Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGA-GATTCTTCGTCACAGTCTTC-GTGATTTCA 110232 ||| ||||| ||| |||| | || | | |||| | || | ||| || | || Sbjct 111538 GTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT--GACAACGACTTGAGTAACCTCG 111481 Query 110233 TGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATA 110292 || || || | | ||||| | ||| | | | | | ||| || | ||||||||||| Sbjct 111480 TGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGGAGAGCAATG 111421 Query 110293 GACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACAC 110352 || || | || || || || ||| | | | |||||| | |||||| || ||| Sbjct 111420 GAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCAC 111361 Query 110353 AAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCC 110412 || ||||| || |||| || | |||||| || || || ||||||||||||| Sbjct 111360 AAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCC 111301 Query 110413 TTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACA 110472 || || |||||| |||| | || || || || || | || |||||||| | ||| | Sbjct 111300 TTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGC 111241 Query 110473 TCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGT 110530 | ||| || || |||| | | |||||||| ||| || | || | Sbjct 111240 TTTTGGGCTTTGATGGTCTTGCG--ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAG 111183 Query 110531 CCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGG 110589 | ||||| || | || || ||||||| | |||| | || | ||| || | || Sbjct 111182 CTTCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGACATTCATTGGGGCACATTAGT 111124 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 | ||||| | || ||||| | ||||||||| || || |||||||||| || || Sbjct 111123 GTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAG 111064 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 ||||| |||||| || | ||||| | || ||||| || || |||| || || Sbjct 111063 AAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCG 111004 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGAC----- 110764 | | ||| | |||||| || || |||||||| || | | || | |||| Sbjct 111003 AAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACC---AGGACGCTTGTTT 110947 Query 110765 CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823 || ||| ||| || || | || ||| |||||| || | ||||| || | || || Sbjct 110946 CCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCG 110887 Query 110824 TCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| | ||| || ||||| || | || || | ||||||| || ||| || | Sbjct 110886 TTGGAGTTACCGTTGGTACCGGCGATGTATGCACC-AGTGGCACGGATTCTGTGAATGTT 110828 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAA 110941 | ||||||||| || || ||| || ||||| ||| |||| ||| |||||| Sbjct 110827 GAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT-TGAGGGTATCATAAA 110769 Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001 |||||||||| ||| |||| | |||| || ||||| || || | ||| | | | Sbjct 110768 TACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGTGCTTGTG 110709 Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTT 111059 | || || || ||| |||||||| | || || |||| | ||| |||||| Sbjct 110708 GTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA--GTATTTGTTGGACATAAG 110651 Query 111060 GTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCAT 111119 |||||| || || | ||| | ||| | |||||||||||||| |||||| ||||| Sbjct 110650 GTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCAT 110591 Query 111120 GAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTC 111179 || ||| | || || ||| | |||||||| | || ||||||| ||| Sbjct 110590 GATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATCGCTC 110531 Query 111180 TAGGGTCTTGAGACCAAAGTAT 111201 |||||||||| || |||||| Sbjct 110530 GAGGGTCTTGAATCCGAAGTAT 110509 >seq208 Length=98604 Score = 114 bits (126), Expect = 2e-20 Identities = 349/522 (67%), Gaps = 23/522 (4%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || ||||| |||||||| || ||||| || | || |||||||| ||||| Sbjct 39613 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 39554 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || || || | | | | ||| ||||| |||||||| Sbjct 39553 AAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTT-ACCAAGAGCGACTAGAAGACG 39495 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||||| || ||||||| |||| |||| | || ||||| || | || ||| Sbjct 39494 ATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACA 39435 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCT-CGATCTCCACAGCTTCTTTCACGA-----T 119440 || ||||| ||| | ||| ||||| | ||||||| ||||| ||| | | || | Sbjct 39434 AGGAAGAGCCTCGGTCAAGAA-TTCTTGTTCGATCTCAACAGCCTCTGTGATGACATCTT 39376 Query 119441 GGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCA 119498 ||| | | || || | || ||| | ||| ||| | || | | | ||| | Sbjct 39375 GGACAGCCTGCTTGCT-TGGACGGT--GCTTC--AAGTGGGAGAAGAGGAGGC-ACG-CG 39323 Query 119499 AATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGC 119558 || || ||| || |||||||| || |||||||||||||| ||| || |||| | Sbjct 39322 AAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCC 39263 Query 119559 ATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCC 119618 || | || | ||||| ||||| ||||| | | || |||| |||||||||||| Sbjct 39262 ATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCC 39203 Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCA 119674 || ||| || ||||| | ||||||| ||| |||||| ||| ||||| ||| ||| Sbjct 39202 TCAACAGCAGCAAAAGCAACCAGACGCTGAGC-AAAGGTAGAGTTTTTGTCTTGAATCCA 39144 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 ||| |||||||| ||| || || ||||| || || || Sbjct 39143 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGT 39102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974299331800