Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq199 167 3e-36
>seq199
Length=820378
Score = 167 bits (184), Expect = 3e-36
Identities = 215/295 (73%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||||| | || | | ||| | |||||| | || | |||||||||||||| |||
Sbjct 624646 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 624705
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866
||||| |||||||| | || ||||| ||| ||||||| || || | | | |||
Sbjct 624706 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 624765
Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924
||| || | | | || || |||| || ||||| ||||||||||| ||||| |
Sbjct 624766 GTGTCGAAGGACAGATTG--GGCGATAAGGCTATGAGATTGGCACTACAGACCAGAGAAC 624823
Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984
|||||||||| || || || || || ||||| ||||||||||||| ||| |||||||||
Sbjct 624824 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 624883
Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039
||||| | ||||||||| | || |||||| | | ||||| | ||||| ||
Sbjct 624884 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 624938
Score = 114 bits (126), Expect = 1e-20
Identities = 168/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930
|||||||||||||||||| |||| |||||||| || | | |||| | | | | ||
Sbjct 625837 ATTATGATTACATACCCAAGTACATTCGGTGTATTCGAGCCAGAGATTAAGGCTGCT-TG 625895
Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990
| | || |||||| | | || ||||| || || | || || || ||| | ||||| ||
Sbjct 625896 TGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGACGGTGCCAATATGAATGCTCA 625955
Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050
| || | || ||||| |||||| ||||| |||||||| ||| | || ||
Sbjct 625956 AATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCACAA 626015
Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105
|||||||||||||||||||| || ||||| || || || || || || ||||||
Sbjct 626016 GACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 626070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579211127523040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |