Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq79 131 1e-24
seq172 98.7 8e-15
seq151 98.7 8e-15
>seq79
Length=493706
Score = 131 bits (144), Expect = 1e-24
Identities = 316/475 (67%), Gaps = 4/475 (1%)
Strand=Plus/Plus
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
|||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| ||
Sbjct 355208 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 355267
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174
|| |||| | | | || ||||| ||||| | |||| | | || ||||| || ||
Sbjct 355268 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 355327
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
| || |||||||| ||| | || || | | || || | || || || |||
Sbjct 355328 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 355387
Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293
|||||||| | || ||| | | | | | ||||| || ||||||| | |
Sbjct 355388 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 355447
Query 550294 TCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352
| | |||| | ||| ||||| |||| ||| |||| || || ||||| || | |
Sbjct 355448 T--TCAAGGGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 355505
Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412
| |||| | || || || | | ||| | || | | || || | ||||
Sbjct 355506 AGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACCGTCAACAACGCTGTCGTCACTG 355565
Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472
| |||||||| || | ||||| ||||||||||| || |||||||| || | || || |
Sbjct 355566 TTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCCG 355625
Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
| || |||||||| ||||| ||||| || |||||||| ||||| |||| || ||
Sbjct 355626 GTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGG 355680
Score = 127 bits (140), Expect = 2e-23
Identities = 260/384 (68%), Gaps = 3/384 (1%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| || |||||||||||||| || || || || | || || ||||| || ||||| |
Sbjct 356219 AACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTATCCTCTCTGGTGAC 356278
Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326
||| || || |||| || | || | ||| | ||||| | || | |||||||||
Sbjct 356279 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 356338
Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386
| || || | ||| || ||||| || || || | | || || || |||||
Sbjct 356339 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 356398
Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446
|| || ||| || || ||||| | || ||||| ||| ||| ||| |||||| |
Sbjct 356399 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 356458
Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506
|| || || || |||| ||| || || || || | || || | || | |
Sbjct 356459 TTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAACTCACT 356518
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||||||||| || || ||||| || || || |||||||| ||||||
Sbjct 356519 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATATTGATGCC 356578
Query 552567 AATGGAATTTTGAATGTGACTGCT 552590
|| || || ||||||| |||||
Sbjct 356579 AACGGTATCATGAATGTCTCTGCT 356602
>seq172
Length=467703
Score = 98.7 bits (108), Expect = 8e-15
Identities = 247/373 (66%), Gaps = 2/373 (1%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
|||||||||||||| ||||| |||||||| | || || || | ||||| ||| |
Sbjct 411299 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 411358
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
||||| ||||| | || ||||| ||||| || || | || | | ||| |
Sbjct 411359 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 411418
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073
| |||| ||| || ||| | | | | || || || | || || || |
Sbjct 411419 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACTTTGGAGCCCGTTGC 411477
Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133
|||||| | | ||| | || || || |||||||| || |||| || || ||||||||
Sbjct 411478 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 411537
Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193
||||||||| | ||||| || ||| | | || || | ||||| || || ||
Sbjct 411538 TGGATCTACCCGTATTCCCAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 411597
Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253
|| | |||| |||| || |||||||||||||| || ||||| || ||||||| |
Sbjct 411598 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 411657
Query 552254 TATTCTTTCTGGA 552266
||| || || |||
Sbjct 411658 TATCCTCTCAGGA 411670
>seq151
Length=776351
Score = 98.7 bits (108), Expect = 8e-15
Identities = 257/390 (66%), Gaps = 8/390 (2%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| || ||||||||||| || | |||||||| |||||| | | || | || |||
Sbjct 63292 AACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGTGGTGTTTTGTCCGGA--- 63348
Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
|| ||| ||| | | || || || | ||||| | || | |||||||| |
Sbjct 63349 ---GAGGAAGGTACTG-ATGACATCGTTCTCATGGATGTCAACCCATTGACTCTTGGTAT 63404
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
|| || ||||||| ||||||| || | ||| ||||| || ||| |||
Sbjct 63405 TGAGACTACTGGAGGTGTTATGACCAAGTTGATCCCAAGAAACACCGTTATCCCTACCCG 63464
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448
||||||| | || || || | || || ||| | | || |||||| | |
Sbjct 63465 CAAATCTCAAATCTTCTCCACAGCCGCCGACAACCAACCCGTAGTCCTGATTCAAGTCTA 63524
Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508
||||||||| | || || ||||| || || | ||||||| || | || ||
Sbjct 63525 TGAAGGAGAGCGTGCTTTGACAAAAGACAACAACAACCTTGGTAAATTCGAATTGACTGG 63584
Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568
|||||| || || || ||||| || || |||||||||||| | ||||| | || |||||
Sbjct 63585 TATTCCACCAGCACCACGTGGTGTTCCTCAAATTGAAGTTTCCTTCGAACTTGACGCCAA 63644
Query 552569 TGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|||||| ||||| || || ||| |||| ||
Sbjct 63645 TGGAATCTTGAAGGTTACCGCTGGTGACAA 63674
Score = 87.8 bits (96), Expect = 1e-11
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045
||| ||| || ||||| ||| | ||||||||||| ||| || ||||| ||||||
Sbjct 62156 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 62215
Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105
|| |||||||| ||| | | || || ||||| || | | |||||| || ||||| |
Sbjct 62216 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 62275
Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143
||||| || |||| ||| || || |||||||| ||
Sbjct 62276 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 62313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029283783678190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |