Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq162 107 1e-18
seq199 102 5e-17
>seq162
Length=634359
Score = 107 bits (118), Expect = 1e-18
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || | ||||||||| || || ||||||||||| || || || | |
Sbjct 33442 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCC 33501
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| ||||| || ||||| ||||| ||||| ||||| || || | || | ||| || ||
Sbjct 33502 ATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 33561
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| ||| || || | |||| ||| | ||| || |||||||| || | || |
Sbjct 33562 GTCTTGAATCTT-TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAA 33620
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || || || || || || || ||||||||||||
Sbjct 33621 TGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 33658
>seq199
Length=820378
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| || |||||| || ||||| |||||||| |||||
Sbjct 1854 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 1795
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || || | ||| || ||||| || |||| ||| |||||||| | ||
Sbjct 1794 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 1735
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || || | ||| ||| | ||| || ||||| ||
Sbjct 1734 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTATCAGAGGATTCAAC 1676
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| |||||||| || | ||||| || |||||||||||
Sbjct 1675 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703074595520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |