Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq162 93.3 4e-14
>seq162
Length=634359
Score = 93.3 bits (102), Expect = 4e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||||| || | | | || |||||||| |||||||||||||||| |||
Sbjct 33892 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 33951
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||||||||| |||||||| | |||| | ||| |||||||| ||||| || ||
Sbjct 33952 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACC 34011
Query 132022 TTCTTTATC 132030
|| || ||
Sbjct 34012 CTCCTTGTC 34020
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| |||||||||||||||||||||| |||||| |||||| || ||||| || |
Sbjct 34200 GACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCTGCG 34259
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
|||| | |||||||| || || || || || || |||||
Sbjct 34260 AAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 34300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476609823785160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |