Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq162 122 8e-23
seq199 95.1 1e-14
seq153 84.2 2e-11
>seq162
Length=634359
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || || || |||||||| |||||||||||||| | | |||| | || ||
Sbjct 33448 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 33507
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|| |||||| || ||||| ||||| ||||| ||||||| || | | |||||||||
Sbjct 33508 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 33567
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
|||||| ||| | | | | | || || ||||||||| |||| || || || ||
Sbjct 33568 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 33627
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| |||||||| || || || ||||||||
Sbjct 33628 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 33657
Score = 86.0 bits (94), Expect = 6e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||||||||||||||| ||| |||||| || | || || || || || || || ||
Sbjct 34202 CTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAA 34261
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||| ||||||| |||| | |||||| ||| ||||| ||| | ||
Sbjct 34262 GATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTGCTCTTTA-CGT 34320
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
|| | | || ||||| || || ||||| | ||||| || || || ||
Sbjct 34321 TGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 34369
>seq199
Length=820378
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | ||||| || | || |||||||| |||||||| ||||
Sbjct 1854 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 1795
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || || ||||| || || || |||| || ||||| || | ||
Sbjct 1794 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 1735
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| |||||| ||| | | | | | || || ||||| |||
Sbjct 1734 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 1675
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| ||||||||||| | ||||| || || ||||||||
Sbjct 1674 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1628
>seq153
Length=332877
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||||||||||||||| || | | |||||| |||| || || ||||| || || || |
Sbjct 175548 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 175489
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
|||| || || ||||||| |||| | |||||||||| ||||||
Sbjct 175488 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 175443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450792298333480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |