Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq199 129 6e-25
seq162 123 3e-23
>seq199
Length=820378
Score = 129 bits (142), Expect = 6e-25
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || |||||||||||||| |||||||||||| || |||| | || ||||| ||
Sbjct 1831 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 1772
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| || || |||| ||| |||||||| || || || || || || || || || ||
Sbjct 1771 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 1712
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||||| ||| | || || || ||||| || ||||| || ||||||||||| ||
Sbjct 1711 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 1652
Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713
| ||||| ||||| || |||||
Sbjct 1651 GAGGGTTTTGACGAAGATCTGCAT 1628
>seq162
Length=634359
Score = 123 bits (136), Expect = 3e-23
Identities = 152/208 (73%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || |||||||| ||||| ||||||||||||| | |||| ||
Sbjct 33896 AGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGA 33955
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| ||||| ||||| || || || |||||||| || ||||| || || || || ||
Sbjct 33956 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCC 34015
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | ||||||||||| || || || |||||
Sbjct 34016 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTG 34075
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703
||||| || || || | ||| || ||||
Sbjct 34076 ATGGTCTTGCCAGTGAGAGTCTTGACGA 34103
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581
||||| ||||||||||| || || || || | || || | ||| || || |||||
Sbjct 33467 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAAA 33525
Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641
||||| ||||| || || || || || || || || |||||||| ||| |||||
Sbjct 33526 GATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATT 33585
Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701
||| | || || ||||||||||| || | |||||||| || || || ||||| || ||
Sbjct 33586 GTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGAC 33645
Query 134702 GAAAATTTGCAT 134713
||| || |||||
Sbjct 33646 GAAGATCTGCAT 33657
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
||||| || || || || |||||||||||||||||||||| | ||| | || ||
Sbjct 34185 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCA 34244
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| ||||||||||| || ||||| ||||| || || || || || || || || || |||
Sbjct 34245 AGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGA 34304
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | || ||| || || || ||||| || ||||| ||
Sbjct 34305 ATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTG 34364
Query 134685 CCGGT 134689
|||||
Sbjct 34365 CCGGT 34369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505396940662120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |