Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq134 116 3e-21 >seq134 Length=600417 Score = 116 bits (128), Expect = 3e-21 Identities = 324/493 (66%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 |||||||||||| | | ||||| ||||| || || || ||||||||| | ||| | Sbjct 317227 AATGGTCCTGAAGTACTGAATAAGTATGTTGGACAGTCTGAAGAAAATATCCGAAAGCTC 317168 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559 || || || || || |||| | | || | | || | | | ||| ||| || || || Sbjct 317167 TTCGCAGATGCAGA-GAAGGAGTACAAGGAGAAAGGAGACGAGAGTGGTTTACATATCAT 317109 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAA 19610 || | || ||| | ||||| | |||||||||||||| ||| | || Sbjct 317108 CATCTTCGACGAACTCGACGCTGTTTGTAAGCAAAGAGGAAGCGGAGCAGGTGGCGGAAC 317049 Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 || || ||||| |||||||||||| | ||||| || | || |||||| |||| || Sbjct 317048 CGGCGTCGGTGACAGTGTTGTCAATCAGTTGCTGTCCAAGCTCGATGGTGTTGACCAGCT 316989 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || || ||| | ||||||| ||||||||| | |||| | || || || ||| | Sbjct 316988 CAACAACATTCTCCTTATTGGAATGACTAATCGGATGGATATGATTGATGATGCTTTACT 316929 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 || || || || ||||| | | || ||||| ||| || |||||| || | | Sbjct 316928 TCGTCCTGGACGTTTGGAGGTGCATATGGAAATCTCCTTGCCGGATGAAGCGGGTAGAGC 316869 Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGT 19850 | | ||| | || || || ||||||| ||||| | || ||| || | || ||||| Sbjct 316868 GCAGATTCTCAAGATTCACACATCAAAGATGCGCGACAACAACGTTATGGATCCAGATGT 316809 Query 19851 AGATCTAGAAGAAATTGCAGCGGCTACCAAA-AACTATAGCGGCGCAGAACTTGAGGGAT 19909 | | | | |||| |||| | ||| |||| |||| || |||||| ||| || Sbjct 316808 AAACGTTGCAGAACTTGC-TCACCTAACAAAGAACTTCTCAGGAGCAGAAATTGGAGGTC 316750 Query 19910 TAGTGAGGGCCGC 19922 |||| | | |||| Sbjct 316749 TAGTCAAGTCCGC 316737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454881037155