Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq134 116 3e-21
>seq134
Length=600417
Score = 116 bits (128), Expect = 3e-21
Identities = 324/493 (66%), Gaps = 13/493 (3%)
Strand=Plus/Minus
Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500
|||||||||||| | | ||||| ||||| || || || ||||||||| | ||| |
Sbjct 317227 AATGGTCCTGAAGTACTGAATAAGTATGTTGGACAGTCTGAAGAAAATATCCGAAAGCTC 317168
Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559
|| || || || || |||| | | || | | || | | | ||| ||| || || ||
Sbjct 317167 TTCGCAGATGCAGA-GAAGGAGTACAAGGAGAAAGGAGACGAGAGTGGTTTACATATCAT 317109
Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAA 19610
|| | || ||| | ||||| | |||||||||||||| ||| | ||
Sbjct 317108 CATCTTCGACGAACTCGACGCTGTTTGTAAGCAAAGAGGAAGCGGAGCAGGTGGCGGAAC 317049
Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670
|| || ||||| |||||||||||| | ||||| || | || |||||| |||| ||
Sbjct 317048 CGGCGTCGGTGACAGTGTTGTCAATCAGTTGCTGTCCAAGCTCGATGGTGTTGACCAGCT 316989
Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730
|| || ||| | ||||||| ||||||||| | |||| | || || || ||| |
Sbjct 316988 CAACAACATTCTCCTTATTGGAATGACTAATCGGATGGATATGATTGATGATGCTTTACT 316929
Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790
|| || || || ||||| | | || ||||| ||| || |||||| || | |
Sbjct 316928 TCGTCCTGGACGTTTGGAGGTGCATATGGAAATCTCCTTGCCGGATGAAGCGGGTAGAGC 316869
Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGT 19850
| | ||| | || || || ||||||| ||||| | || ||| || | || |||||
Sbjct 316868 GCAGATTCTCAAGATTCACACATCAAAGATGCGCGACAACAACGTTATGGATCCAGATGT 316809
Query 19851 AGATCTAGAAGAAATTGCAGCGGCTACCAAA-AACTATAGCGGCGCAGAACTTGAGGGAT 19909
| | | | |||| |||| | ||| |||| |||| || |||||| ||| ||
Sbjct 316808 AAACGTTGCAGAACTTGC-TCACCTAACAAAGAACTTCTCAGGAGCAGAAATTGGAGGTC 316750
Query 19910 TAGTGAGGGCCGC 19922
|||| | | ||||
Sbjct 316749 TAGTCAAGTCCGC 316737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397454881037155
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |