Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq162 176 5e-39
seq199 170 2e-37
seq101 150 2e-31
seq153 143 3e-29
>seq162
Length=634359
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| |||||||| ||||| || || | |||||||||||
Sbjct 33885 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 33826
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || |||| | || || || || |||||||| || || || ||||||
Sbjct 33825 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 33766
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || ||||||||||||||||| ||||||| || || ||| ||||||| ||
Sbjct 33765 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 33706
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || ||| | ||| | ||||| || |||||
Sbjct 33705 ATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGTCTCCGTGGTGG 33659
Score = 161 bits (178), Expect = 1e-34
Identities = 167/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || ||||||||||| ||||| || | ||| |
Sbjct 34101 GTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 34042
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || || |||||||||||||| |||||||| || || || ||| | ||
Sbjct 34041 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATC 33982
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596
|| |||||||| |||||||| |||| ||| ||||| ||| ||||| || ||||||| ||
Sbjct 33981 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGC-GACTACAACATCCAAAAAGA 33923
Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||| ||||| | || | || ||||| |||||
Sbjct 33922 ATCCACCCTTCACTTGGTGCTCCGCCTTCGTGGTGG 33887
Score = 136 bits (150), Expect = 5e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| | |||| ||| | || | |||
Sbjct 34369 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGC 34310
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||| |||||||||||||| || ||||| ||||| | || || || || ||
Sbjct 34309 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 34250
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
||||| || |||| |||||| | ||| ||||| || | |||||||| || ||||| ||
Sbjct 34249 CAACTTGAAGATGGCCGTACCTTGAGC-GACTACAACATTCAAAAGGAGTCTACTCTCCA 34191
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
||| ||| | |||||||| || ||
Sbjct 34190 TCTCGTCCTCCGTCTTCGTGGCGG 34167
Score = 113 bits (124), Expect = 5e-20
Identities = 189/272 (69%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || || ||||| ||||| | || || || ||
Sbjct 33657 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 33598
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||| | || ||||| ||||||||||| || || || |||||
Sbjct 33597 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 33538
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || |||||||| ||||| | ||||||| | || || | || || ||
Sbjct 33537 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 33478
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645
| || ||||| |||| | || | || | |||||||| || || ||| || | |
Sbjct 33477 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGGTCAA---TAGATT 33421
Query 27646 TTT---TCCTGCACATATAATATATGGCTTTC 27674
|| | |||||||||| ||| ||| |||
Sbjct 33420 CTTATCTTCTGCACATATCTTATGCGGCGTTC 33389
>seq199
Length=820378
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||| || || || || || || || || || |||||||| || |
Sbjct 1628 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1687
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||| | || || ||||||||||||||||| || || || |||
Sbjct 1688 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1747
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || || || || ||||||||||| |||| || ||||| | ||||| ||
Sbjct 1748 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1807
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||||||||||||||| | ||| | ||||| || |||||
Sbjct 1808 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGG 1854
>seq101
Length=648506
Score = 150 bits (166), Expect = 2e-31
Identities = 525/811 (65%), Gaps = 19/811 (2%)
Strand=Plus/Minus
Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009
||||| ||||| ||||||||||| || ||| || || ||||| || ||||| |
Sbjct 111378 TCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTC 111319
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| |||||| || |||||||| |||| | || | |||||||| || | || |
Sbjct 111318 TTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCG 111259
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129
|| |||| || ||||| || | || |||| |||||| | | ||||| | ||
Sbjct 111258 AGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTCA 111199
Query 81130 TACTTGGCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCAC 81186
|| | | || |||||| |||| | | || | | |||| | | || ||
Sbjct 111198 TAACTCTCATAGAGAGCTTCA---AACTCGTCGCCATATACATCAGCCAACCCAGGACAT 111142
Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246
|| || |||||||| || ||| || | || || || ||| ||||||||| ||
Sbjct 111141 TCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCC 111082
Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306
|| ||||| | ||| ||| || || ||| ||| | || || | || |||||
Sbjct 111081 GGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTT 111022
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
|| | || || || || | | || || ||||| ||||| ||||| || || | |
Sbjct 111021 CGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCA 110962
Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
|| || | ||||| |||| |||||| | ||||| || || || || | |
Sbjct 110961 CCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGC 110902
Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483
|| || | ||| || | || | |||||| ||||| |||| | || |||| ||
Sbjct 110901 ATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGG 110842
Query 81484 ACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTT--GAAATCTGAGCACACCGG 81540
| || ||| || ||||| || || || | || ||| || ||| ||||||
Sbjct 110841 ATTCTG-TGAATGTTGAGACCAATACCTCCAG--CATTTTTAGAGATCATAGCACATGTC 110785
Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTT 81600
|| | ||| |||||||| || || || ||||| | ||||| |||| | ||| || |
Sbjct 110784 TTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGAT 110725
Query 81601 GACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658
|| | ||| | ||| | | | || || ||| ||||| |||| ||||| |||| |
Sbjct 110724 GAAAGCTGTG--CTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 110667
Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718
| ||| ||||| |||| ||||| || || ||| |||||||||||||||||||
Sbjct 110666 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATAC 110607
Query 81719 CGATAGCTACACGCATAAACATGTACTGGGG 81749
| | || |||||||| | ||| | ||| ||
Sbjct 110606 CAACGGCAACACGCATGATCATTTGCTGTGG 110576
>seq153
Length=332877
Score = 143 bits (158), Expect = 3e-29
Identities = 141/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| || ||||| || || |||||||| ||||| ||||| ||
Sbjct 175367 CTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTAT 175426
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
|| ||| | ||| | || || |||||||||||||||||||| || ||||| || ||| |
Sbjct 175427 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTT 175486
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || |||||||||||||| | || ||||| ||||||| || | |||||
Sbjct 175487 GATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 175546
Query 27594 GG 27595
||
Sbjct 175547 GG 175548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570308753228720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |