Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq162 125 6e-24 seq153 84.2 2e-11 >seq162 Length=634359 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | ||||| | ||||||||| |||| Sbjct 33657 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 33598 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| ||||||||||| || || || ||||| || ||| Sbjct 33597 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 33538 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || ||||| || | || |||| ||||||||| Sbjct 33537 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 33478 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||| || || || ||||| | ||| | || || || Sbjct 33477 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGG 33431 >seq153 Length=332877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || || ||| | || || ||||| || || | || || | ||| Sbjct 175368 TTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTATT 175427 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || || ||||| || || || || || || ||||| ||||| Sbjct 175428 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTG 175487 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | |||||| || ||| | || ||| | ||| |||| || ||||||||||||||| Sbjct 175488 ATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAAG 175547 Query 27177 G 27177 | Sbjct 175548 G 175548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917144173120