Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq101 340 3e-88
>seq101
Length=648506
Score = 340 bits (376), Expect = 3e-88
Identities = 1168/1793 (65%), Gaps = 36/1793 (2%)
Strand=Plus/Minus
Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423
||||| ||| | ||||||||||| || | |||||| | | ||||| || ||||||||
Sbjct 112345 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 112286
Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483
|| || || ||||||| |||| ||| |||||||||| || | ||| |
Sbjct 112285 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 112226
Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543
|| || || ||||| ||||| || || || || | || || || | ||||||
Sbjct 112225 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 112166
Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603
||||||| | ||| || ||||| ||| ||||| | || ||| ||| | |||||
Sbjct 112165 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 112106
Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660
||| |||||| || | | |||||||| || || ||||||| || || |||||
Sbjct 112105 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTT 112046
Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720
|| | || ||| ||| | ||| | | | | || || || |||||||
Sbjct 112045 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 111986
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
||| |||||||||| ||| || | |||| ||| || ||| || |||||||| | |
Sbjct 111985 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 111926
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
|| ||| || | |||||||| || || || |||||||| || || | |||||
Sbjct 111925 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 111866
Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899
|| | || ||| ||| | |||| | |||| || ||| ||| |||||||| || |
Sbjct 111865 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 111807
Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958
||| ||| |||| | ||||||||| || || || | || || ||| || |
Sbjct 111806 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 111748
Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC-TCT-AACGCACCGT 76016
|| || || || || || || | ||| | || |||| | | | || ||| |||
Sbjct 111747 TAGGTCTCATAGGTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGT 111690
Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGA 76075
||||| |||||||| || | | || || | |||| |||||| | ||||| ||
Sbjct 111689 GGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG- 111632
Query 76076 TAATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134
|||| || || | ||| ||||| || || || ||||| || | | | ||||||| |||
Sbjct 111631 TAATCGAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATG 111572
Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194
| |||| || || ||||| | ||||| || || || || || || || ||
Sbjct 111571 ACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTT 111512
Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254
| ||||||||||| |||| | || || | || || | ||||| | |||| ||
Sbjct 111511 CAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTC 111452
Query 76255 TATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATT 76308
||| || | || || ||||| || || || | ||||| || || ||||
Sbjct 111451 ATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATC 111392
Query 76309 AGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAG 76365
| |||| |||| | || || ||||| | ||| | || || || ||
Sbjct 111391 TGG---GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAG 111335
Query 76366 ATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGT 76425
|| | |||||||||||| ||||| |||| ||||| ||||| | || ||| |||| ||
Sbjct 111334 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 111275
Query 76426 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTA 76485
||| | || | |||| ||| || | ||| | | ||||| || | || |
Sbjct 111274 CTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGA 111217
Query 76486 TCGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATCA 76543
| || | || ||| || | | ||| | |||||| || || || | ||||||
Sbjct 111216 CCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCA 111157
Query 76544 TCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGT 76603
|||| |||||||||||||| || ||||| | || ||| || | | | | ||| ||
Sbjct 111156 GCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGC 111097
Query 76604 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663
||||| |||||||| || ||||| | ||| || ||||| |||| | ||||||
Sbjct 111096 TTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCC 111037
Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723
|| || |||||| || || |||||||| | || ||| | ||||| || || |||
Sbjct 111036 TTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGA 110977
Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783
|| | || | |||| || || || || || || || || | ||||| |||||||||
Sbjct 110976 TAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTA 110917
Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843
|| |||||| | ||| || | |||||||| || |||| || || || | || ||
Sbjct 110916 TTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTAT 110857
Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903
||| ||||| || | ||| || || || ||||| || ||||||||||
Sbjct 110856 GCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATC 110797
Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963
| |||||| || | || ||||| || || || |||||||| ||| |||| | ||
Sbjct 110796 ATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATG 110737
Query 76964 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCA 77023
|| || || || | || || || || || || | |||||| || ||
Sbjct 110736 AGGAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCG 110677
Query 77024 TGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATATC-CC 77081
|| ||||| |||| | || | || ||||| || ||||| | ||| || ||||| |
Sbjct 110676 TGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGC-GCTCTCGATATCGTC 110618
Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134
| | ||||| || || || |||||||| | ||| ||||| || |||||| ||
Sbjct 110617 ACCG-TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCA 110566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712932341401920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |