Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq199 131 1e-25 seq162 118 8e-22 seq153 93.3 3e-14 >seq199 Length=820378 Score = 131 bits (144), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||||||||||||||||| |||| || ||| | || || Sbjct 1836 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 1777 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| ||| |||||||| | || | || ||||| ||| Sbjct 1776 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 1717 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| || | |||||| ||||| | || || || | Sbjct 1716 ATCTTGGACTTGACATTGT--CGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTT 1659 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 | ||||||||||| || |||||||| ||||||| Sbjct 1658 TACCCGTGAGGGTTTTGACGAAGATCTGCATGA 1626 >seq162 Length=634359 Score = 118 bits (130), Expect = 8e-22 Identities = 158/214 (74%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||| | ||||||||||| || ||||||||||| | ||||| || | || Sbjct 33448 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCT-GC-CATCC 33505 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| || ||||||||||| ||||| || || | || | ||| ||||| || Sbjct 33506 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 33565 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| || ||| | ||||| || | |||||||| |||| ||||| | Sbjct 33566 TGAATCTTTGACTTGACATTGT--CAATGGTATCTGACGATTCCACTTCCAATGTAATGG 33623 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || | ||||| |||||||| ||||| Sbjct 33624 TCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 33657 Score = 107 bits (118), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||| || |||||||||||||| ||| || ||| | || || Sbjct 33904 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 33963 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || || ||||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 33964 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTG 34023 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| || || ||||| | || || ||| Sbjct 34024 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTC 34081 Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327 || || ||||| ||||| |||| Sbjct 34082 TTGCCAGTGAGAGTCTTGACGA 34103 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| ||| || ||||||||||| || | || ||| | || || Sbjct 33677 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 33736 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | ||| ||||| || | || | ||| ||||| || Sbjct 33737 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 33796 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || || | ||| | ||||| || | || || ||||||| || || ||||| Sbjct 33797 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 33855 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||| |||||||||||||| Sbjct 33856 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 33885 >seq153 Length=332877 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||| |||||||| || | || || |||| || || ||||| ||||| |||| Sbjct 175548 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 175489 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 175488 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 175429 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || || | ||| || ||||| | || || ||||||||||| |||||||| || Sbjct 175428 --CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGAC 175371 Query 44326 GAAG 44329 |||| Sbjct 175370 GAAG 175367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989386514527