Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq199 181 3e-40
seq162 147 5e-30
seq153 125 2e-23
>seq199
Length=820378
Score = 181 bits (200), Expect = 3e-40
Identities = 164/205 (80%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| ||||| || ||||| |||||||||||||| ||| ||| ||
Sbjct 1631 CAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 1690
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || |||||||| || || ||||||
Sbjct 1691 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAA 1750
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || || |||||||||||| | || ||| |||| || ||| ||
Sbjct 1751 CGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 1810
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| ||||| || || || ||||
Sbjct 1811 CAAAAGGAATCCACTCTTCA-CTTG 1834
>seq162
Length=634359
Score = 147 bits (162), Expect = 5e-30
Identities = 153/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || ||||| || ||||| | ||||| || |||||
Sbjct 33882 CAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCAGAT 33823
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| ||| |||||| || || || || || ||||| ||||||||||||
Sbjct 33822 ACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAGCAA 33763
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || || || || ||||| | ||||| | || || ||| ||
Sbjct 33762 CGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAACATC 33703
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| ||||| || |||||||||
Sbjct 33702 CAGAAAGAGTCCACACTGCAT 33682
Score = 141 bits (156), Expect = 2e-28
Identities = 151/198 (76%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || |||||||| || || || ||||| || ||||| || || ||||||||||
Sbjct 34103 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 34044
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||| |||||||| || || || |||||||| || ||||| | |
Sbjct 34043 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 33984
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || ||||| ||||||||||| | || || ||| || ||| |||||||||
Sbjct 33983 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 33924
Query 178111 AATCAACACTGCATCTTG 178128
|||| || || || ||||
Sbjct 33923 AATCCACCCTTCA-CTTG 33907
Score = 116 bits (128), Expect = 9e-21
Identities = 140/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||||||||| || | || |||||||| ||||| ||
Sbjct 34371 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGA 34312
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||||||||| || || ||||| || |||||||| || || | |||||||| || |
Sbjct 34311 GCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 34252
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121
|||| || |||||||| | || |||| ||| || ||| | ||||| || || || ||
Sbjct 34251 AACAACTTGAAGATGGCCGTAC-CTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 34193
Query 178122 CATCTTGT 178129
||||| ||
Sbjct 34192 CATCTCGT 34185
>seq153
Length=332877
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || ||||| || |||||||| ||||| || ||| || || ||
Sbjct 175368 TTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTATT 175427
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| |||||||| || ||||| || |||||||| ||||| |
Sbjct 175428 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTG 175487
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||||||||| || ||||| || ||| | || ||| | || || ||| | |||||
Sbjct 175488 ATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAA 175546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203727637331814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |