Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq199 122 8e-23
seq162 111 1e-19
>seq199
Length=820378
Score = 122 bits (134), Expect = 8e-23
Identities = 168/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
||||| || |||||||| | |||| || || ||| ||||| || ||||| ||||||
Sbjct 1857 CCGCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 1798
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| |||||||| | || ||||| |||||||||||||| ||||| || || || || |
Sbjct 1797 GAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGT 1738
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|| | | |||||||||| ||| || ||| || | || | || || || |
Sbjct 1737 GGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTATCAGAGGATT 1680
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| ||||| | || || ||||||||||| || || || ||||| |||||||||
Sbjct 1679 CAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 1627
>seq162
Length=634359
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||||| |||| |||||||||||||||||||| || || ||
Sbjct 33431 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 33490
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || | |||||| || || || |||| ||||||||||||| ||
Sbjct 33491 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGG 33550
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||| | ||| | |||| | || | | | || || ||| |||||
Sbjct 33551 ATACCCTCCTTGT-CTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCAC 33609
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || |||| ||||| ||||| ||||||||
Sbjct 33610 TTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 33657
Score = 98.7 bits (108), Expect = 9e-16
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||| || || |||||| |||||||| ||||||
Sbjct 34167 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 34226
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || || || ||||| ||||| |||| |||||||||||||| ||||
Sbjct 34227 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 34286
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||| ||| ||| | ||||| | ||| | | | || ||||| ||||| |
Sbjct 34287 ATTCCCTCCTTATCC-TGA-ATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGA 34344
Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838
|||| | || || || || || ||
Sbjct 34345 CCTCGAGGGTGATGGTCTTGCCGGT 34369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462302665097200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |