Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 159 7e-34 >SEQ14127 Length=21342 Score = 159 bits (176), Expect = 7e-34 Identities = 188/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 230387 TCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCC 230446 |||| ||||| || || || | |||| |||| ||| | || ||| |||| ||| | Sbjct 14700 TCATCACAGAGGCTGTCGAGATCGAACAGGAATTCTTGACCGAGGCTCTTCCTTGTGCAC 14759 Query 230447 TTATTGGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||||||||||| |||||| ||| || |||||||| ||||| ||||| || | Sbjct 14760 TTCTTGGCATGAACGC-GAACTTGATGAAGCAATACATCGAGTTCGTCGCCGATCGTCTC 14818 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | ||||| |||||| ||||||| |||||||| ||| ||||| || | || |||||| Sbjct 14819 CTAGTTGCTCTTGGTAACGAGAAGGTGTACAAGTCTTCCAACCCATTCGACTTCATGGAG 14878 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||| || || ||| ||||| ||||||||||| ||| | || ||||||| |||| | Sbjct 14879 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAG 14938 Query 230626 CCTGGTGTGATG 230637 ||||||| ||| Sbjct 14939 GCTGGTGTTATG 14950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057618869745050