Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 95.1 1e-14 >SEQ14127 Length=21342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 338/517 (65%), Gaps = 20/517 (4%) Strand=Plus/Minus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| |||| ||| | || ||||||||||| || || || ||| || || || ||| Sbjct 14934 TGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCC 14875 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033 || || || || || || | || | | ||| || || || | ||||| Sbjct 14874 ATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACCAAGAGC---AACTAGG 14818 Query 16034 ---CTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATAAG 16089 | ||| || || || || || ||||| ||| |||| ||| || || || | ||| Sbjct 14817 AGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCG-TTCATGCCAAGAAG 14759 Query 16090 TCGTACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | | || |||||||| | || || |||| ||||| ||| | || || ||| | |||| Sbjct 14758 T-GCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATGA 14700 Query 16149 TATC--GGT--GGCT-CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203 ||| || | || | || || ||||||| || | ||| || | || || Sbjct 14699 CATCTTGGACAGCCTGCTTGCTTG-GACGGTGC----TTCAAGTGGGAGAAGAGGAGGCA 14645 Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 |||||||||| ||| || ||||| || | | ||| || || ||||| ||||| | || Sbjct 14644 CGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACC 14585 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 | ||| || || ||||| | |||||| || | ||| ||||| || ||||| || Sbjct 14584 AGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGAT 14525 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAAT 16383 |||||||||| |||||||| | | || | || | |||| | ||| | |||| Sbjct 14524 GCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGAAT 14465 Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420 |||| | |||| |||||||| | || || ||| Sbjct 14464 CCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAA 14428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511317646788200