Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14127 95.1 1e-14
>SEQ14127
Length=21342
Score = 95.1 bits (104), Expect = 1e-14
Identities = 338/517 (65%), Gaps = 20/517 (4%)
Strand=Plus/Minus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
||||| |||| ||| | || ||||||||||| || || || ||| || || || |||
Sbjct 14934 TGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCC 14875
Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033
|| || || || || || | || | | ||| || || || | |||||
Sbjct 14874 ATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACCAAGAGC---AACTAGG 14818
Query 16034 ---CTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATAAG 16089
| ||| || || || || || ||||| ||| |||| ||| || || || | |||
Sbjct 14817 AGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCG-TTCATGCCAAGAAG 14759
Query 16090 TCGTACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148
| | || |||||||| | || || |||| ||||| ||| | || || ||| | ||||
Sbjct 14758 T-GCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATGA 14700
Query 16149 TATC--GGT--GGCT-CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203
||| || | || | || || ||||||| || | ||| || | || ||
Sbjct 14699 CATCTTGGACAGCCTGCTTGCTTG-GACGGTGC----TTCAAGTGGGAGAAGAGGAGGCA 14645
Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263
|||||||||| ||| || ||||| || | | ||| || || ||||| ||||| | ||
Sbjct 14644 CGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACC 14585
Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323
| ||| || || ||||| | |||||| || | ||| ||||| || ||||| ||
Sbjct 14584 AGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGAT 14525
Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAAT 16383
|||||||||| |||||||| | | || | || | |||| | ||| | ||||
Sbjct 14524 GCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGAAT 14465
Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420
|||| | |||| |||||||| | || || |||
Sbjct 14464 CCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAA 14428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511317646788200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |