Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 246 4e-60
SEQ14127 98.7 1e-15
>SEQ14673
Length=3941
Score = 246 bits (272), Expect = 4e-60
Identities = 1138/1776 (64%), Gaps = 35/1776 (2%)
Strand=Plus/Plus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| | |||| || |||||||| || | ||| | || ||| ||
Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 875
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
|| || ||||| ||||| || || | ||||| || | ||| || ||||||| |
Sbjct 876 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAACA 935
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 936 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 995
Query 53048 TTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
|| | | || |||||||| ||||| || | || || | ||||| || | || |
Sbjct 996 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1055
Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 1056 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1115
Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 1116 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1175
Query 53225 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 1176 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1234
Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 53342
|| | | ||||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 1235 GTGTTGTTTGATTG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293
Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 53402
||| || || || | | || ||| | || || || || |
Sbjct 1294 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 1353
Query 53403 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 53460
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 1354 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1411
Query 53461 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAG- 53517
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 1412 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 1468
Query 53518 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576
|| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 1469 CAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 1526
Query 53577 AGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635
|||| | | ||||| | || || || || || || || || || || | |||||||
Sbjct 1527 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 1586
Query 53636 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC--AAATTGTC-CATCTAT-TAC 53691
|||| |||| || || | || || | ||||| || || | ||| || | |
Sbjct 1587 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 1646
Query 53692 AAACATGTTC--AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749
| | ||||| | ||||| || |||| ||||| || || |||| | | |
Sbjct 1647 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 1706
Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809
|||| | || || ||||| | ||| | ||||| || | || | ||| |||
Sbjct 1707 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTA 1766
Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869
||||| || || || |||||||| ||||| |||||||| | || || || | || |
Sbjct 1767 CTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 1826
Query 53870 TCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT 53929
|| | ||| | | ||| | | || || || | || | |||| || |
Sbjct 1827 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCT 1884
Query 53930 TCGTATAG-TGT-ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 53987
|| ||| | | ||| | |||||||||||| || | |||| |||| |||||||
Sbjct 1885 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGAC 1944
Query 53988 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 54047
|||||| || ||||| | | ||| || ||| | | || || ||||| |||||||
Sbjct 1945 ATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGAT 2004
Query 54048 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106
| |||||||| | || ||| || ||||| | || | ||| || || || |||
Sbjct 2005 CCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTC 2063
Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166
||| || || |||||| | | || ||| | ||||| || || | || | | |
Sbjct 2064 TTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAAT 2123
Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226
| ||||| || |||||||| || || || | ||||||||| ||||| || ||||||
Sbjct 2124 GCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGT 2183
Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286
| ||| || | || || ||||| ||| ||||| |||| ||| || ||| |||||
Sbjct 2184 AGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCA 2243
Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346
|| || | ||| ||||| || || || || |||||||||| | || |||
Sbjct 2244 CGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTC 2303
Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406
|| | |||||||| || || || ||||| || ||| |||| | || || || ||
Sbjct 2304 TTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGAT 2363
Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466
|| | || | || || || || | ||||| || ||||| || || ||
Sbjct 2364 GAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTAT 2423
Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCC 54525
|| | || | || ||||| ||||| || || || ||||| || | ||||| ||
Sbjct 2424 TTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TGAATACC 2482
Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561
|| || |||||||| | ||| || || || | |||
Sbjct 2483 AACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518
>SEQ14127
Length=21342
Score = 98.7 bits (108), Expect = 1e-15
Identities = 226/336 (67%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 24355 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 24413
||||||| || ||||| |||||||| ||| || | | || || | ||||||||
Sbjct 14370 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTGATGTATGTATCG 14312
Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473
|| | ||| || |||| || || || || || || ||||| || ||||||||
Sbjct 14311 ATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAACCGTAGAAG 14252
Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533
|| | |||||||| || || ||||| || || || || | | || || || |||
Sbjct 14251 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 14192
Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC---- 24589
|||||||| ||||| || || || | || || || ||||| || ||
Sbjct 14191 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 14132
Query 24590 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 24649
| | ||| ||| ||||||||| | | || || || | || | ||||| |||||||
Sbjct 14131 TTGAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 14073
Query 24650 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685
|| |||||||| |||||||| ||||| | ||||||
Sbjct 14072 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 14037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593609275294800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |