Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14127 147 2e-30
seq6733 132 5e-26
SEQ14665 111 2e-19
seq515 89.7 5e-13
>SEQ14127
Length=21342
Score = 147 bits (162), Expect = 2e-30
Identities = 204/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||| | || ||| | ||| ||
Sbjct 14037 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 14096
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| |||||| ||| ||| | | | || || | |||||| ||||||||
Sbjct 14097 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 14156
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || ||||| || |||||| || ||||||||||| || ||||||||
Sbjct 14157 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 14216
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || | ||||||| || ||||||||||| || || || |||
Sbjct 14217 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 14276
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||| | ||||| |||| || || ||||||||| || |||
Sbjct 14277 GAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATAC 14321
Score = 127 bits (140), Expect = 2e-24
Identities = 224/321 (70%), Gaps = 4/321 (1%)
Strand=Plus/Plus
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
|||| ||||| || || || || || |||||| ||||||| || ||||| | |
Sbjct 14493 AGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCTTCTA 14552
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| || ||||||||||| || ||| | ||| | || || |||||| ||| ||||||||||
Sbjct 14553 TCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCATCT 14612
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215
|| | || || ||||| ||| |||||| || || | || ||| || ||| ||| |
Sbjct 14613 CCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTCCCACTTGAAGCACC 14672
Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275
| || ||| | | ||| || || |||| || || |||| ||||| ||| |
Sbjct 14673 GTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTCGAGATCGAACAGGAAT 14732
Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAA-ACGATGTCGCA 117333
|| | ||||| || || || |||| || || || | || ||||| |||| |||
Sbjct 14733 TCTTGACCGAGGCTCTTCCTTGTGC-ACTTCTTGGCATGAA-CGCGAACTTGATGAAGCA 14790
Query 117334 ATACATCGAGTTCGTCGCCGA 117354
|||||||||||||||||||||
Sbjct 14791 ATACATCGAGTTCGTCGCCGA 14811
>seq6733
Length=2883
Score = 132 bits (146), Expect = 5e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||| || |
Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | ||||| ||||| ||||| | || |||
Sbjct 1740 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1681
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 1680 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1621
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
||||| ||||| |||| || ||
Sbjct 1620 ATCCAAAAGGAATCCACTCTTCA 1598
>SEQ14665
Length=6019
Score = 111 bits (122), Expect = 2e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| |||||||| |||| ||||| | |||||| | |
Sbjct 2307 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCG 2366
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | ||||| |||||||| || |||| || ||||| | |
Sbjct 2367 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 2426
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| ||| || ||||| || || || | |||||||| | ||||||||||||||| || |
Sbjct 2427 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2486
Query 40880 AGGCCACGCTGCATCTAGTGTTGCGC 40905
| |||| || || | ||| | |||
Sbjct 2487 AATCCACCCTTCACTTGGTGCTCCGC 2512
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836
|||| || || ||||| ||||| ||||||||||||| || |||| || || || ||
Sbjct 2541 ATTCAAGATAAGGAGGGTATCCCACCGGACCAGCAACGTCTTATCTTTGCTGGTAAGCAA 2600
Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
|| || || | ||||| || ||||||||||||||||| ||| |||| ||||||
Sbjct 2601 CTTGAGGATGGTCGCACTCTATCAGACTACAACATCCAGAAAGAGTCCACACTGCAT 2657
>seq515
Length=18996
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751
||||| ||||| || || || ||||| || ||||||||| | || ||||| || | ||
Sbjct 13708 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 13767
Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | | | ||||| || || | ||||| ||||| || ||| ||||||| ||
Sbjct 13768 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 13827
Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871
||| | |||| ||| || || || || || |||| || ||||| |||||||||||
Sbjct 13828 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 13887
Query 40872 CCAGAAGG 40879
||| ||||
Sbjct 13888 CCAAAAGG 13895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515121726967600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |