Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 93.3 4e-14 >SEQ14127 Length=21342 Score = 93.3 bits (102), Expect = 4e-14 Identities = 194/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || ||||| || || | | || |||| || || ||||||||||| || || Sbjct 14323 ATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGG 14264 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 ||||| || ||||| | ||| |||| ||||| |||||| || | || | | | Sbjct 14263 AAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGG 14204 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 || ||||| |||||||| ||| ||||| || || || || | ||| || |||| Sbjct 14203 TTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAG 14144 Query 16685 ttttCGTTATC--TGAAAGTTTTA-ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 || | ||| ||| | ||| ||| || || || ||||| || |||| |||| Sbjct 14143 CGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCT 14084 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 ||| | ||||| ||||| || | |||||||| ||||||| ||| || Sbjct 14083 TCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 14037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462424498511000