Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14127 93.3 4e-14
>SEQ14127
Length=21342
Score = 93.3 bits (102), Expect = 4e-14
Identities = 194/287 (68%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564
|| || ||||| || || | | || |||| || || ||||||||||| || ||
Sbjct 14323 ATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGG 14264
Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624
||||| || ||||| | ||| |||| ||||| |||||| || | || | | |
Sbjct 14263 AAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGG 14204
Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684
|| ||||| |||||||| ||| ||||| || || || || | ||| || ||||
Sbjct 14203 TTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAG 14144
Query 16685 ttttCGTTATC--TGAAAGTTTTA-ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741
|| | ||| ||| | ||| ||| || || || ||||| || |||| ||||
Sbjct 14143 CGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCT 14084
Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788
||| | ||||| ||||| || | |||||||| ||||||| ||| ||
Sbjct 14083 TCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 14037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462424498511000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |