Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 118 9e-22 SEQ14665 107 2e-18 >SEQ14127 Length=21342 Score = 118 bits (130), Expect = 9e-22 Identities = 229/335 (68%), Gaps = 5/335 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| || ||||| || ||||| | ||||| | ||| || Sbjct 14037 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 14096 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||||||| || | ||||| || |||| | |||| || Sbjct 14097 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 14156 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| |||||||| || || || |||||||| | ||||| | Sbjct 14157 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 14216 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| ||| | | ||||| | ||||| ||||| || ||| | || Sbjct 14217 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 14276 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG-ACAACGA 57865 || || | || || |||| || || || ||||||||||| ||| | |||| |||| Sbjct 14277 GAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATCAAGGAACAAGCC 14336 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900 | | ||| || || ||||| || || || |||| Sbjct 14337 CAACGAACATA-TCTCTTCAATGCAATTGAGACAA 14370 >SEQ14665 Length=6019 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || ||||| || ||||| |||| || || ||||||||| ||| Sbjct 2307 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCG 2366 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||| ||| | || || || || || ||| | | Sbjct 2367 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 2426 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | |||||||| ||||| | ||||| | || ||||||| || ||||| ||||||| Sbjct 2427 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2486 Query 31383 AATCGACTCTTCATCTGGTACT 31404 |||| || ||||| |||| || Sbjct 2487 AATCCACCCTTCACTTGGTGCT 2508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445682066569200