Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 250 3e-61 SEQ14127 95.1 2e-14 >SEQ14673 Length=3941 Score = 250 bits (276), Expect = 3e-61 Identities = 1138/1776 (64%), Gaps = 35/1776 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || |||||||| || | ||| | || ||| || Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 875 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || ||||| ||||| || || | ||||| || | ||| || ||||||| | Sbjct 876 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAACA 935 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 936 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 995 Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | || ||||| || ||||| || || || || | ||||| || | || | Sbjct 996 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1055 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 1056 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1115 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | ||| || | |||| ||| || ||| || || ||||| | |||| || || Sbjct 1116 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1175 Query 65256 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 | |||||||| || || || | || |||||||| || || | ||||| || | | ||| Sbjct 1176 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1234 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 65373 || | | ||||| || | || || | ||||| | |||||| || | ||| ||| Sbjct 1235 GTGTTGTTTGATTG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293 Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 65433 ||| || || || | | || ||| | || || || || | Sbjct 1294 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 1353 Query 65434 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 65491 || || || ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 1354 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1411 Query 65492 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAG- 65548 |||||| | | || || | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 1412 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 1468 Query 65549 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 65607 || ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 1469 CAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 1526 Query 65608 AGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 65666 |||| | | ||||| | || || || || || || || || || || | |||||| Sbjct 1527 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 1586 Query 65667 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTAT-TAC 65722 |||| |||| || || | || || | ||||| | || ||||| || | | Sbjct 1587 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 1646 Query 65723 AAACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 | | ||||| | |||| || |||| ||||| || || |||| | | | Sbjct 1647 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 1706 Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| | || || ||||| | ||| | ||||| || | || | ||| ||| Sbjct 1707 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTA 1766 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 ||||| || || || |||||||| ||||| ||||||||| | || || || | |||| Sbjct 1767 CTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 1826 Query 65901 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT 65960 || | ||| | | ||| | | | || || || | || | |||| || | Sbjct 1827 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCT 1884 Query 65961 TCGTATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 66018 || ||| | | ||| | ||| |||||||| || | |||| |||| ||||||| Sbjct 1885 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGAC 1944 Query 66019 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 66078 |||||| || ||||| | | ||| || ||| | | || || ||||| ||||||| Sbjct 1945 ATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGAT 2004 Query 66079 CAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 | |||||||| | || ||| || | ||| | || | ||| || || || ||| Sbjct 2005 CCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTC 2063 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 ||| || || |||||| | | || ||| ||||| || || | || | || | Sbjct 2064 TTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAAT 2123 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | ||||| || |||||||| || || || | ||||||||| ||||| || |||||| Sbjct 2124 GCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGT 2183 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 | ||| || | || || ||||| |||| ||||| |||| ||| || ||| | ||| Sbjct 2184 AGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCA 2243 Query 66318 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377 || || | ||| ||||| || || || || |||||||||| | || ||| Sbjct 2244 CGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTC 2303 Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 || | |||||||| || || || ||||| || ||| |||| | || || || || Sbjct 2304 TTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGAT 2363 Query 66438 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 66497 || | || | || || || || | ||||| || ||||| || || || Sbjct 2364 GAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTAT 2423 Query 66498 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCC 66556 || | || | || ||||| |||||||| || || ||||| || | ||||| || Sbjct 2424 TTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TGAATACC 2482 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 || || |||||||| | ||| || || || | ||| Sbjct 2483 AACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518 >SEQ14127 Length=21342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 225/336 (67%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 36378 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 36436 ||||||| || ||||| |||||||| ||| || | | || || | |||||||| Sbjct 14370 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTGATGTATGTATCG 14312 Query 36437 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 || | ||| || |||| || || || || || || ||||| || |||||||| Sbjct 14311 ATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAACCGTAGAAG 14252 Query 36497 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 36556 || | |||||||| || || ||||| || || || || | | || || || ||| Sbjct 14251 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 14192 Query 36557 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT---- 36612 |||||||| ||||| || || || | || || || ||||| || | Sbjct 14191 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 14132 Query 36613 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 36672 | | ||| ||| ||||||||| | | || || || | || | ||||| ||||||| Sbjct 14131 TTGAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 14073 Query 36673 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 || |||||||| |||||||| ||||| | |||||| Sbjct 14072 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 14037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658048281933400