Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 251 1e-61 >SEQ14673 Length=3941 Score = 251 bits (278), Expect = 1e-61 Identities = 1145/1780 (64%), Gaps = 43/1780 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || ||||||||| || | ||| | || ||| || Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 875 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || ||||| ||||| || || | ||||| || | ||| || ||||||| | Sbjct 876 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAACA 935 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 936 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 995 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | || ||||| || ||||| || || || || | ||||| || | || | Sbjct 996 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1055 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 1056 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1115 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | ||| || | |||| ||| || ||| || |||||||| | | || || || Sbjct 1116 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1175 Query 79135 AAAATTTGAGCAGTTGAT-GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | |||||||| || || | || ||||||||||| || || | ||||| || | | ||| Sbjct 1176 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1234 Query 79194 GTATGATCTGATT-TTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACAT 79252 || | | ||||| | |||| || | ||||| |||||||| || | || ||| Sbjct 1235 GTGTTGTTTGATTGATTTCTTCAAGCTA-TCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293 Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGTATGTTTCATAA 79311 ||| | ||| ||||| || || || | || | ||| ||| ||| || ||||| Sbjct 1294 CCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAAGTCTCATAG 1352 Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAAC--TCGCCTCTAATGCTCCGTAATAAATGGTTT 79369 | || || | || | || |||| || || || ||| ||||| |||| Sbjct 1353 GTACCCAACTCCTTAGC--AATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTT 1410 Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAGAG 79427 |||| || | | ||||| | |||| ||||| ||| | |||||||| |||| ||||| Sbjct 1411 CGAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAG 1467 Query 79428 --AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485 || ||| || || || | ||||||||||| | | ||||||||| ||| | ||| Sbjct 1468 CCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT- 1525 Query 79486 GAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544 | |||| || ||||| | || || || || || || || || || || | || || Sbjct 1526 GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT 1585 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC--AAAT--CGTCCATCTATTA 79600 ||| | |||| || || | || || | ||||| || | | || || | Sbjct 1586 GACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTC 1645 Query 79601 CAAACATGTT--CAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 || | ||||| | || | || |||| ||||| || || |||| | | | Sbjct 1646 CACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGA 1705 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 |||| | ||||| ||||| | || | |||||| || | || | ||| || Sbjct 1706 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 1765 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 |||||| || || || |||||||| ||||| ||||| ||| | || || || | |||| Sbjct 1766 ACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGC 1825 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTG-TATCTCT--TTTC 79835 || | ||| | | ||| | | | || | | || | |||| | |||| ||| Sbjct 1826 CTCGAGAATGGAGTACCAAAGCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTC 1882 Query 79836 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895 | || || ||| | ||| |||||||| || | ||||| | || ||||| Sbjct 1883 CTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 1942 Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAG 79953 |||||| | || ||||| | | ||| || | | || ||| || || ||||| ||| Sbjct 1943 ACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCATGAAG 2000 Query 79954 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 ||||| |||||||| | || ||| || ||||| | || | || || || || Sbjct 2001 AGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATG 2059 Query 80013 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 |||||| || || |||||| | | || ||| | ||||| || || | || | || Sbjct 2060 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 2119 Query 80073 CATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 80132 | | || || || |||||||| || || || | ||||||||| ||||| || |||| Sbjct 2120 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAAC 2179 Query 80133 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 80192 || | ||| || | || || ||||| |||| ||||| |||| ||| || ||| | Sbjct 2180 TCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 2239 Query 80193 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 |||||| || | ||| ||||| || || || || |||||||||| | || || Sbjct 2240 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 2299 Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 | || | |||||||| || || || || || || || |||| | || || || || Sbjct 2300 TGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCA 2359 Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 || | || | || || || || | ||||| || ||||| || || Sbjct 2360 TGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 2419 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAA 80431 |||| | |||| || ||||| |||||||| || || ||||| || | |||| Sbjct 2420 GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TGAA 2478 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 | || || || |||||||| | ||| || || || | ||| Sbjct 2479 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718132912521400