Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 192 8e-44 >SEQ14673 Length=3941 Score = 192 bits (212), Expect = 8e-44 Identities = 1134/1782 (64%), Gaps = 47/1782 (3%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || |||||||| || | ||||||||| | ||||| || |||||||| || || || ||| Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | |||| || |||||||| || | ||| || | | || || || Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTG-TGGGGTCTTTCAT 874 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| ||||| || || || || | ||||| || | ||| || ||||||| | Sbjct 875 GTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAAC 934 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| Sbjct 935 AATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 994 Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | | || ||||| || ||||| || || || || | || || || | || Sbjct 995 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGA 1054 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||||||| | ||| | | | | || || || ||||| ||||| |||||||| Sbjct 1055 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 1114 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || ||| || | ||||| ||| || ||| || || ||||| | |||| || || Sbjct 1115 AGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACC 1174 Query 71217 CAAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | |||||||| || || || | || |||||||| || || | | ||| || | | || Sbjct 1175 GAGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 1233 Query 71276 CATGTGATCGGATTTTATCTTTTAGAGAT-TCCCAATTCCAAAGATCCGATGGTACAACN 71334 | ||| | |||| || | || || | ||||| | |||||| || | ||| ||| Sbjct 1234 CGTGTTGTTTGATTG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACT 1292 Query 71335 NNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG-CGTATGATCCTGCATATGTATCGTA 71393 ||| || | || | ||| ||| | || || || || Sbjct 1293 CCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAAGTCTCATA 1351 Query 71394 TGGT--CCTTCTTTTTCGGCTAGTTCACAACTCGCC-TCT-AATGCTCCATAATAAATGG 71449 ||| || || || | | | || |||| | | | || || | | ||||| | Sbjct 1352 -GGTACCCAACTCCTTAG-CAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAG 1407 Query 71450 TTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 71508 ||||||| || | | ||||| | |||| ||||| || |||||||| |||| ||| Sbjct 1408 TTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAG 1465 Query 71509 AG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTAT 71566 || || ||| || || || | |||||||| || | | ||||||||| || | || Sbjct 1466 AGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAAT 1524 Query 71567 TAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 71625 | | |||| | | ||||| | || || || || || || || || || || | ||| Sbjct 1525 T-GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTT 1583 Query 71626 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCTAT- 71681 ||||| | |||| || || | || || | ||||| | || | ||| || Sbjct 1584 CTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATG 1643 Query 71682 TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 | || | | ||| || |||| || |||| ||||| || || |||| | | Sbjct 1644 TCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCA 1703 Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799 | |||| | |||||| ||||| | ||| | ||||| || | || | ||| Sbjct 1704 GAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGG 1763 Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859 |||||||| || || || |||||||| ||||| || || ||| | || || || | ||| Sbjct 1764 TTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGA 1823 Query 71860 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTTTTC 71918 | || | ||| | | ||| | | | || || || | |||| | |||| Sbjct 1824 GCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTACCT 1880 Query 71919 TCTTTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 || ||| || | | ||| | ||| |||||||| || | ||| | || ||| Sbjct 1881 TCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCA 1940 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAA 72034 ||||||||||| || ||||| | || ||| || | | || ||| || || ||||| | Sbjct 1941 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCATGA 1998 Query 72035 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||||| |||||||| | || ||| || ||||| | || | || || || || Sbjct 1999 AGAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCA 2057 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 |||||| || || |||||| | | || ||| | ||||| || || | || | Sbjct 2058 TGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACT 2117 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || |||||||| || || || | ||||||||| ||||| || || Sbjct 2118 GCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAA 2177 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| | ||| || | || || ||||| ||| ||||| |||| ||| || ||| Sbjct 2178 ACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCA 2237 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 ||||||| || || ||| ||||| || || || || |||||||||| | || Sbjct 2238 GTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCA 2297 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 ||| || | |||||||| || || || ||||| || ||| |||| | || || || Sbjct 2298 CATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAG 2357 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 || || | || | || || || || | ||||| || ||||| || Sbjct 2358 CATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTG 2417 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATG 72512 || |||| | |||| || ||||| |||||||| || || ||||| || | || Sbjct 2418 AAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TG 2476 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || || || || |||||||| | ||| || || || | ||| Sbjct 2477 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671012228852600