Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 192 8e-44
>SEQ14673
Length=3941
Score = 192 bits (212), Expect = 8e-44
Identities = 1134/1782 (64%), Gaps = 47/1782 (3%)
Strand=Plus/Plus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| |||||||| || | ||||||||| | ||||| || |||||||| || || || |||
Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919
|| | |||| || |||||||| || | ||| || | | || || ||
Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTG-TGGGGTCTTTCAT 874
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
|||||| ||||| || || || || | ||||| || | ||| || ||||||| |
Sbjct 875 GTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAAC 934
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
|| || ||| | ||| ||||| | || || |||| | ||| || || ||||||
Sbjct 935 AATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 994
Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
||| | | || ||||| || ||||| || || || || | || || || | ||
Sbjct 995 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGA 1054
Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156
||||||| | ||| | | | | || || || ||||| ||||| ||||||||
Sbjct 1055 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 1114
Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216
|| ||| || | ||||| ||| || ||| || || ||||| | |||| || ||
Sbjct 1115 AGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACC 1174
Query 71217 CAAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275
| |||||||| || || || | || |||||||| || || | | ||| || | | ||
Sbjct 1175 GAGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 1233
Query 71276 CATGTGATCGGATTTTATCTTTTAGAGAT-TCCCAATTCCAAAGATCCGATGGTACAACN 71334
| ||| | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 1234 CGTGTTGTTTGATTG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACT 1292
Query 71335 NNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG-CGTATGATCCTGCATATGTATCGTA 71393
||| || | || | ||| ||| | || || || ||
Sbjct 1293 CCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAAGTCTCATA 1351
Query 71394 TGGT--CCTTCTTTTTCGGCTAGTTCACAACTCGCC-TCT-AATGCTCCATAATAAATGG 71449
||| || || || | | | || |||| | | | || || | | ||||| |
Sbjct 1352 -GGTACCCAACTCCTTAG-CAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAG 1407
Query 71450 TTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 71508
||||||| || | | ||||| | |||| ||||| || |||||||| |||| |||
Sbjct 1408 TTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAG 1465
Query 71509 AG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTAT 71566
|| || ||| || || || | |||||||| || | | ||||||||| || | ||
Sbjct 1466 AGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAAT 1524
Query 71567 TAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 71625
| | |||| | | ||||| | || || || || || || || || || || | |||
Sbjct 1525 T-GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTT 1583
Query 71626 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCTAT- 71681
||||| | |||| || || | || || | ||||| | || | ||| ||
Sbjct 1584 CTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATG 1643
Query 71682 TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739
| || | | ||| || |||| || |||| ||||| || || |||| | |
Sbjct 1644 TCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCA 1703
Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799
| |||| | |||||| ||||| | ||| | ||||| || | || | |||
Sbjct 1704 GAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGG 1763
Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859
|||||||| || || || |||||||| ||||| || || ||| | || || || | |||
Sbjct 1764 TTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGA 1823
Query 71860 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTTTTC 71918
| || | ||| | | ||| | | | || || || | |||| | ||||
Sbjct 1824 GCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTACCT 1880
Query 71919 TCTTTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976
|| ||| || | | ||| | ||| |||||||| || | ||| | || |||
Sbjct 1881 TCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCA 1940
Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAA 72034
||||||||||| || ||||| | || ||| || | | || ||| || || ||||| |
Sbjct 1941 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCATGA 1998
Query 72035 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
||||||| |||||||| | || ||| || ||||| | || | || || || ||
Sbjct 1999 AGAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCA 2057
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
|||||| || || |||||| | | || ||| | ||||| || || | || |
Sbjct 2058 TGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACT 2117
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | || || || |||||||| || || || | ||||||||| ||||| || ||
Sbjct 2118 GCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAA 2177
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|||| | ||| || | || || ||||| ||| ||||| |||| ||| || |||
Sbjct 2178 ACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCA 2237
Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333
||||||| || || ||| ||||| || || || || |||||||||| | ||
Sbjct 2238 GTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCA 2297
Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393
||| || | |||||||| || || || ||||| || ||| |||| | || || ||
Sbjct 2298 CATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAG 2357
Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453
|| || | || | || || || || | ||||| || ||||| ||
Sbjct 2358 CATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTG 2417
Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATG 72512
|| |||| | |||| || ||||| |||||||| || || ||||| || | ||
Sbjct 2418 AAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TG 2476
Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554
|| || || || |||||||| | ||| || || || | |||
Sbjct 2477 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671012228852600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |