Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value SEQ14665 111 2e-19 seq6733 89.7 5e-13 >SEQ14665 Length=6019 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || ||||||||||| |||||||| ||||||| |||| |||||| Sbjct 2505 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 2446 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 |||||||||||||| |||||| |||||| ||||| ||||| ||||| || ||||| Sbjct 2445 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTC 2390 >seq6733 Length=2883 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | || || |||| || ||||| ||||| |||||||| ||| Sbjct 1573 GCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 1632 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | |||| || | ||||||||||| || || || ||||||||||||||||||| || | Sbjct 1633 AAGGGTGCGTCCA-TCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTG 1691 Query 143076 GTATGCCTTCTTTGTC 143091 | || || || ||||| Sbjct 1692 GGATTCCCTCCTTGTC 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506918479213200