Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value SEQ14665 114 3e-20 >SEQ14665 Length=6019 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || || ||||| |||||||| || || || | || ||||||||||| Sbjct 2872 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAG 2813 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | |||||| || || || || || || || || |||||||||| || ||||| Sbjct 2812 ATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTG 2753 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| | ||| || || | |||||| ||||| || || | || || || Sbjct 2752 TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACG 2693 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2692 AAGATCTGCAT 2682 Score = 104 bits (114), Expect = 5e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || || ||||| |||||||| | || | || ||| Sbjct 2224 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAGGTACGGCCATCT 2165 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| || || || || | | |||||| || || || ||||| || |||||| Sbjct 2164 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCC 2105 Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| ||||| ||||| || || | |||||||| | || ||||| || || || || Sbjct 2104 TGAATC-TTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGT 2046 Query 104527 CTTACCAGT 104535 ||| || || Sbjct 2045 CTTGCCGGT 2037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151175124060580