Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value SEQ12501 105 6e-18 seq5408 104 2e-17 >SEQ12501 Length=547 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 5344 GTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATT 5403 ||| |||| ||| ||||| || ||| ||| |||| ||||||||||| |||| || | Sbjct 193 GTCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGCACCTTTACTTG 252 Query 5404 GCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAG 5463 || || || || | ||||| ||||| |||||| |||||| | ||||||| || || Sbjct 253 ACCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGTTTGGATGCTAG 312 Query 5464 GCCGGAACGTGGTGCTATGCGTCCGT 5489 |||||| || || ||||||||||||| Sbjct 313 GCCGGAGCGGGGAGCTATGCGTCCGT 338 >seq5408 Length=546 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 5345 TCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTG 5404 || |||| ||| ||||| || ||| ||| |||| ||||||||||| |||| || | Sbjct 353 TCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGCACCTTTACTTGA 294 Query 5405 CCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGG 5464 || || || || | ||||| ||||| |||||| |||||| | ||||||| || ||| Sbjct 293 CCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGTTTGGATGCTAGG 234 Query 5465 CCGGAACGTGGTGCTATGCGTCCGT 5489 ||||| || || ||||||||||||| Sbjct 233 CCGGAGCGGGGAGCTATGCGTCCGT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447665691221200