Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
SEQ12501 105 6e-18
seq5408 104 2e-17
>SEQ12501
Length=547
Score = 105 bits (116), Expect = 6e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 5344 GTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATT 5403
||| |||| ||| ||||| || ||| ||| |||| ||||||||||| |||| || |
Sbjct 193 GTCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGCACCTTTACTTG 252
Query 5404 GCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAG 5463
|| || || || | ||||| ||||| |||||| |||||| | ||||||| || ||
Sbjct 253 ACCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGTTTGGATGCTAG 312
Query 5464 GCCGGAACGTGGTGCTATGCGTCCGT 5489
|||||| || || |||||||||||||
Sbjct 313 GCCGGAGCGGGGAGCTATGCGTCCGT 338
>seq5408
Length=546
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 5345 TCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTG 5404
|| |||| ||| ||||| || ||| ||| |||| ||||||||||| |||| || |
Sbjct 353 TCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGCACCTTTACTTGA 294
Query 5405 CCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGG 5464
|| || || || | ||||| ||||| |||||| |||||| | ||||||| || |||
Sbjct 293 CCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGTTTGGATGCTAGG 234
Query 5465 CCGGAACGTGGTGCTATGCGTCCGT 5489
||||| || || |||||||||||||
Sbjct 233 CCGGAGCGGGGAGCTATGCGTCCGT 209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447665691221200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |