Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value SEQ12501 113 4e-20 seq5408 107 2e-18 >SEQ12501 Length=547 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 5597 TGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACC 5656 ||||| | ||||||||| ||| |||||||||||| ||| ||| ||| ||||||| | Sbjct 182 TGCGCAACACGGTCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGC 241 Query 5657 ACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGC 5716 || || | || || || || || || ||||||||||||||| |||||| | ||| Sbjct 242 ACCTTTACTTGACCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGT 301 Query 5717 TTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 ||| || ||||||||||||||||| | ||| |||| Sbjct 302 TTGGATGCTAGGCCGGAGCGGGGAGCTATGCGTCCGT 338 >seq5408 Length=546 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 5597 TGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACC 5656 ||||| | || |||||| ||| |||||||||||| ||| ||| ||| ||||||| | Sbjct 365 TGCGCAACACGATCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGC 306 Query 5657 ACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGC 5716 || || | || || || || || || ||||||||||||||| |||||| | ||| Sbjct 305 ACCTTTACTTGACCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGT 246 Query 5717 TTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 ||| || ||||||||||||||||| | ||| |||| Sbjct 245 TTGGATGCTAGGCCGGAGCGGGGAGCTATGCGTCCGT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429975073106120