Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
SEQ12501 113 4e-20
seq5408 107 2e-18
>SEQ12501
Length=547
Score = 113 bits (124), Expect = 4e-20
Identities = 119/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 5597 TGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACC 5656
||||| | ||||||||| ||| |||||||||||| ||| ||| ||| ||||||| |
Sbjct 182 TGCGCAACACGGTCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGC 241
Query 5657 ACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGC 5716
|| || | || || || || || || ||||||||||||||| |||||| | |||
Sbjct 242 ACCTTTACTTGACCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGT 301
Query 5717 TTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753
||| || ||||||||||||||||| | ||| ||||
Sbjct 302 TTGGATGCTAGGCCGGAGCGGGGAGCTATGCGTCCGT 338
>seq5408
Length=546
Score = 107 bits (118), Expect = 2e-18
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 5597 TGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACC 5656
||||| | || |||||| ||| |||||||||||| ||| ||| ||| ||||||| |
Sbjct 365 TGCGCAACACGATCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGC 306
Query 5657 ACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGC 5716
|| || | || || || || || || ||||||||||||||| |||||| | |||
Sbjct 305 ACCTTTACTTGACCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGT 246
Query 5717 TTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753
||| || ||||||||||||||||| | ||| ||||
Sbjct 245 TTGGATGCTAGGCCGGAGCGGGGAGCTATGCGTCCGT 209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429975073106120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |