Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 250 3e-61
SEQ14127 102 1e-16
>SEQ14673
Length=3941
Score = 250 bits (276), Expect = 3e-61
Identities = 1141/1781 (64%), Gaps = 45/1781 (3%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| | |||| || |||||||| || | ||| | || ||| ||
Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 875
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
|| || ||||| ||||| || || | ||||| || | ||| || ||||||| |
Sbjct 876 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAACA 935
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 936 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 995
Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | | || ||||| || ||||| || || || || | ||||| || | || |
Sbjct 996 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1055
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 1056 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1115
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 1116 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1175
Query 62412 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 1176 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1234
Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529
|| | | ||||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 1235 GTGTTGTTTGATTG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293
Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589
||| || || || | | || ||| | || || || || |
Sbjct 1294 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 1353
Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62647
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 1354 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1411
Query 62648 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAG- 62704
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 1412 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 1468
Query 62705 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763
|| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 1469 CAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 1526
Query 62764 AGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822
|||| | | ||||| | || || || || || || || || || || | ||||||
Sbjct 1527 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 1586
Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TAC 62878
|||| |||| || || | || || | ||||| | || | ||| || | |
Sbjct 1587 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 1646
Query 62879 AAACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936
| | ||||| || |||| || |||| ||||| || || |||| | | |
Sbjct 1647 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 1706
Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996
|||| | || || ||||| | ||| | || || || | || | ||| |||
Sbjct 1707 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTA 1766
Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056
||||| || || || |||||||| ||||| ||||||||| | || || || | ||||
Sbjct 1767 CTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 1826
Query 63057 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTC 63112
|| | ||| | | ||| | | | || || || | || | || || | |||
Sbjct 1827 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTC 1886
Query 63113 TCTT---TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
|| | || |||| | | | ||| |||||||| || | |||| |||| ||
Sbjct 1887 TCATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCC 1939
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229
||||||||||| || ||||| | | ||| || ||| | | || || ||||| ||
Sbjct 1940 AGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAA 1999
Query 63230 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288
|||||| |||||||| | || ||| || ||||| | || | ||| || || ||
Sbjct 2000 GAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCAT 2058
Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348
|||||| || || |||||| | | || ||| | ||||| || || | || | |
Sbjct 2059 GGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTG 2118
Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408
| | | ||||| || |||||||| || || || | ||||||||| ||||| || |||
Sbjct 2119 CAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAA 2178
Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468
||| | ||| || | || ||||| || |||| |||||||||| ||| || |||
Sbjct 2179 CTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAG 2238
Query 63469 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528
||||||| || | ||| ||||| || || || || |||||||||| | || |
Sbjct 2239 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 2298
Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588
|| || | || ||||| ||||| || || || || || |||| | || || || |
Sbjct 2299 ATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 2358
Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648
| || | || | || || || || | ||||| || ||||| || |
Sbjct 2359 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 2418
Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63707
| |||| | || | || ||||| |||||||| || || ||||| || | |||
Sbjct 2419 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TGA 2477
Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748
|| || || || |||||||| | ||| || || || | |||
Sbjct 2478 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518
>SEQ14127
Length=21342
Score = 102 bits (112), Expect = 1e-16
Identities = 296/453 (65%), Gaps = 2/453 (0%)
Strand=Plus/Minus
Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056
|| |||||| || || ||||| ||||| || | || ||||| || || || || ||
Sbjct 14953 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 14894
Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116
| | | || || || |||||||| || || || |||| | || || | || |
Sbjct 14893 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTT 14834
Query 33117 TCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33175
|| | || | | | ||| |||||||| || || ||| ||||||| ||| |
Sbjct 14833 ACCAAGAGCAACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC 14774
Query 33176 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 33235
||||| || | |||| | ||||||||| | || | ||||| ||||| || |
Sbjct 14773 G-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGA 14715
Query 33236 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295
| || ||||| || | | | || | | | || || | ||| || || |
Sbjct 14714 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 14655
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
| | | || ||||| ||| || ||||| || || | || || || ||||| |
Sbjct 14654 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 14595
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
| ||||| || | ||| | ||||||||| || ||||| || || |||||||||||||||
Sbjct 14594 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 14535
Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448
|||||||| || || || |||||||| ||||
Sbjct 14534 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAA 14502
Score = 86.0 bits (94), Expect = 8e-12
Identities = 191/285 (67%), Gaps = 5/285 (2%)
Strand=Plus/Minus
Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633
|| |||||||| | ||| || |||| || || || || || || || || ||
Sbjct 14320 TATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAA 14261
Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693
|||||||| || | |||||||| || || ||||| || || || || | | ||
Sbjct 14260 CCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTC 14201
Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753
|| || ||||||||||| ||||| || || || | || || || |||||
Sbjct 14200 TCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGC 14141
Query 33754 TCGTC----TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 33809
|| || | | ||| ||| ||||||||| | | || || || | || | |||||
Sbjct 14140 TCATCATCATTGAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 14082
Query 33810 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
||||||| || |||||||| |||||||| ||||| | ||||||
Sbjct 14081 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 14037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622829346176600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |